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Default motif check to False in seqops.isMotifInClip() #29

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merged 1 commit into from
Nov 13, 2024
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Default motif check to False in seqops.isMotifInClip() #29

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6 changes: 5 additions & 1 deletion src/teloclip/seqops.py
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Original file line number Diff line number Diff line change
Expand Up @@ -138,6 +138,10 @@ def isMotifInClip(samline, motifList, leftClip, rightClip, leftClipLen, rightCli
# Sam seq field
SAM_SEQ = 9

# Initialize leftcheck and rightcheck
leftcheck = False
rightcheck = False

# Search motif/s as regex in the clipped segment
if leftClip:
leftcheck = check_sequence_for_patterns(
Expand All @@ -149,4 +153,4 @@ def isMotifInClip(samline, motifList, leftClip, rightClip, leftClipLen, rightCli
)

# True if either clipped end sequence contains at least one instance of any motif.
return any(leftcheck, rightcheck)
return any([leftcheck, rightcheck])