Default motif check to False in seqops.isMotifInClip() #3

	name: Python Tests

	on: [pull_request]

	jobs:
	test:
	runs-on: ubuntu-latest

	strategy:
	matrix:
	python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]

	steps:
	# Checkout the latest commit associated with the PR
	- uses: actions/checkout@v4

	- name: Debug matrix value
	run: echo "Python version is ${{ matrix.python-version }}"

	# Set up Miniconda
	- name: Set up Miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true # Optional: update Conda to the latest version
	python-version: ${{ matrix.python-version }}

	# Create and activate the Conda environment using the environment.yml file
	- name: Create and activate Conda environment
	run: \|
	conda env create -f environment.yml -n test-env
	conda activate test-env
	shell: bash -l {0} # Use bash with the login shell to activate Conda

	# Install any additional dependencies not listed in environment.yml
	- name: Install additional dependencies
	run: \|
	conda activate test-env
	pip install '.[tests]' # Install all dependencies, including test-specific ones
	shell: bash -l {0}

	# Run pytest on the specified directory
	- name: Run tests
	run: \|
	conda activate test-env
	pytest tests
	shell: bash -l {0}

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