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Adam Taranto edited this page Jun 18, 2019 · 1 revision

Welcome to the TIRmite wiki!

Tutorials

Extract TIR
Seeding TIR-pHMM
Iterative TIR update
Align and curate (inc examples of fractured alignments)
Run pairing on custom TIR set (Use results from multiple models)
Length distribution (id outliers)
Cluster with CD-HIT
Align within families and build HMMs for RepeatMasker
De-RIP consensus (for fungal TEs)
Classification of TIR elements