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v2.1

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@ATpoint ATpoint released this 09 Dec 10:00
· 25 commits to main since this release
457dbda
  • input is now a samplesheet to match samples to fastq files
  • support technical replicates for a sample, so several fastq files, merged prior to alignment
  • change trimmer to fastp and move to separate process
  • params validation via a schema file
  • report exact command lines and software versions into pipeline_info/ folder in the output directory
  • modules generally accept a meta map inspired by nf-core for easy and standardized parsing of sample name, paired/single-end layout etc
  • general overhaul in terms of code cleanup and structure