fix bug with use of existing size factors #5
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - '**' | |
| paths-ignore: | |
| - '*.md' | |
| - '*.MD' | |
| - '*.ignore' | |
| - LICENSE | |
| jobs: | |
| SigGenes: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # Run everything via the Bioconductor docker image as it has almost all dependencies preinstalled | |
| - name: devtools-check-docker | |
| run: | | |
| bioc_install='BiocManager::install(c("edgeR", "limma", "Matrix", "S4Vectors", "scuttle", "SummarizedExperiment", "SingleCellExperiment"))' | |
| dev_check='devtools::check("/SigGenes/")' | |
| dev_doc='devtools::document("/SigGenes/")' | |
| testthat='testthat::test_file("/SigGenes/tests/testthat/all_tests.R")' | |
| #docker run -v "$(pwd)":"/SigGenes/" bioconductor/bioconductor_docker:RELEASE_3_18 Rscript --vanilla -e "${bioc_install}; ${dev_check}; ${dev_doc}; ${testthat}" | |
| docker run -v "$(pwd)":"/SigGenes/" bioconductor/bioconductor_docker:RELEASE_3_19 Rscript --vanilla -e "${bioc_install}; ${dev_check}; ${dev_doc}; ${testthat}" |