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Changes to control model sparsity and MTSS improvements #331
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Commits on May 7, 2024
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(1) Added code to DCNNModelWrapper to track absolute sum of 1st hidde…
…n layer weights for each feature as it evolves over epochs, to see effect of setting weight decay parameters; (2) Added model parameters xgb_alpha and xgb_lambda and corresponding hyperopt parameters xgba and xgbb to control strength of L1 and L2 regularization penalties.
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Commits on May 22, 2024
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Commits on May 31, 2024
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Added two new parameters, wdp and wdt, to allow hyperopt domain searc…
…hing on weight_decay_penalty and weight_decay_penalty_type parameters. Completed implementation of hyperopt domain specification for xgb_alpha and xgb_lambda.
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Added sparsity-related parameters weight_decay_penalty, weight_decay_…
…penalty_type, xgb_alpha and xgb_lambda to set of model parameters displayed by the various compare_models functions.
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Commits on Jun 12, 2024
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Fixed MTSS bug where population was not sorted by score after calling…
… step(); changed order of operations so that grading happens at end of step() method rather than at beginning. Added serial_grade_population method for debugging. Simplified code to address some performance issues.
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Commits on Jun 13, 2024
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Changed to use single-threaded function to grade chromosomes, after s…
…eeing that it runs much faster than the multithreaded version. Added documentation.
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Implemented a new fitness function to more robustly enforce dissimila…
…rity between test and training set scaffold structures. Fixed a bug where the splitter always returned the split from the last generation rather than the best-ever split. Added code to track the individual fitness function terms over generations so that they can be displayed in diagnostic plots.
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Commits on Jun 18, 2024
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Normalize fitness scores to the range [0,1]. Add the total fitness sc…
…ore to the fitness_scores dictionary so that it can be plotted together with the component scores.
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Commits on Jun 21, 2024
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Added early stopping to terminate GA if no fitness improvement after …
…specified number of generations. Replaced print() calls with log messages so we can control verbosity of output. Changed split() to use log_every_n argument to control frequency of messages during GA operation.
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Implemented enhancement request from AMPL issue #318: Random forest a…
…nd XGBoost classification models now support class balancing weights when weight_transform_type parameter is set to 'balancing'.
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Commits on Jun 28, 2024
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Commits on Jul 1, 2024
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Commits on Jul 2, 2024
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Commits on Jul 12, 2024
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Added initial version of function to draw line plot of NN feature wei…
…ght absolute sums vs epoch, to assess effect of weight decay penalty.
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Commits on Jul 19, 2024
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(1) Added code to DCNNModelWrapper to track absolute sum of 1st hidde…
…n layer weights for each feature as it evolves over epochs, to see effect of setting weight decay parameters; (2) Added model parameters xgb_alpha and xgb_lambda and corresponding hyperopt parameters xgba and xgbb to control strength of L1 and L2 regularization penalties.
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Added two new parameters, wdp and wdt, to allow hyperopt domain searc…
…hing on weight_decay_penalty and weight_decay_penalty_type parameters. Completed implementation of hyperopt domain specification for xgb_alpha and xgb_lambda.
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Added sparsity-related parameters weight_decay_penalty, weight_decay_…
…penalty_type, xgb_alpha and xgb_lambda to set of model parameters displayed by the various compare_models functions.
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Fixed MTSS bug where population was not sorted by score after calling…
… step(); changed order of operations so that grading happens at end of step() method rather than at beginning. Added serial_grade_population method for debugging. Simplified code to address some performance issues.
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Changed to use single-threaded function to grade chromosomes, after s…
…eeing that it runs much faster than the multithreaded version. Added documentation.
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Implemented enhancement request from AMPL issue #318: Random forest a…
…nd XGBoost classification models now support class balancing weights when weight_transform_type parameter is set to 'balancing'.
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Added initial version of function to draw line plot of NN feature wei…
…ght absolute sums vs epoch, to assess effect of weight decay penalty.
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Commits on Jul 22, 2024
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Commits on Jul 23, 2024
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Commits on Aug 5, 2024
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