This repository contains code for the rotavirus genetic diversity project. The model is calibrated to data from Bangladesh, focusing on the pre-vaccine period.
pip install -r requirements.txt
This does not install the code as an importable module; just run rotaABM.py for that (see below).
Call python rotaABM.py which writes results to the results folder. File names are set based on parameter values. Run data_cleaning.py to parse the output files into summary statistics.