v0.2.14

What's Changed

• Add mehod to go from SNP-level (SNPObject) to window-level ancestry information (LocalAncestryObject) by @miriambt in #17

Full Changelog: v0.2.13...v0.2.14

v0.2.13

What's Changed

• Enhance the scatter plot to support diploid data and update maasMDS and mdPCA to compute and store haplotypes_, samples_, n_haplotypes, and n_samples by @miriambt in #16

Full Changelog: v0.2.12...v0.2.13

v0.2.12

What's Changed

• Modify the SNPObject to store LAI data at the SNP-level + add mehod to go from window-level to SNP-level in the WindowLevelAncestryObject by @miriambt in #15

Full Changelog: v0.2.11...v0.2.12

v0.2.11

What's Changed

• Fix MSPreader bug related to dtype of chromosomes by @miriambt in #14

Full Changelog: v0.2.10...v0.2.11

v0.2.10

What's Changed

• Improve documentation and code of ancestry readers/writers. Solve variants_alt inconsistency. Rename phased to sum_strands and set default to False by @miriambt in #12
• Optimize lazy execution during pvar read by @kscott-1 in #11
• Some minor fixes and improvements mostly related to SNP readers by @salcc in #13

Full Changelog: v0.2.9...v0.2.10

v0.2.9

What's Changed

• redo pvar indexing logic & lazily load pvar file to save memory by @kscott-1 in #8
• Add support for .pvar.zst input and output by @salcc in #9
• Add gpu and docs extras to tox setup by @salcc in #10

New Contributors

• @kscott-1 made their first contribution in #8

Full Changelog: v0.2.8...v0.2.9

v0.2.8

This release does not include changes to the functionalities of snputils, but updates the CI/CD pipeline and the package description.

Full Changelog: v0.2.3...v0.2.8

v0.2.3

What's Changed

• Fix SNP writers related to pathlib. Refactor and document Ancestry Objects, SNPObject, and dim reduction classes by @miriambt in #5

Full Changelog: v0.2.2...v0.2.3

v0.2.2

What's Changed

• Add project urls to pyproject.toml so they show up on PyPI sidebar by @salcc in #4
• Integrate GitHub Actions into a single one and add README badge by @salcc in #3

Full Changelog: v0.2.1...v0.2.2

v0.2.1

What's Changed

• Replace string-based file extension checks with pathlib and update plink version by @davidbonet in #2

Full Changelog: v0.2.0...v0.2.1