Add mehod to go from SNP-level (SNPObject) to window-level ancestry information (LocalAncestryObject) #17
+169
−13
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Implemented the
convert_to_window_level
method within theSNPObject
class to aggregate ancestry data into genomic windows within aLocalAncestryObject
. This method supports three flexible options for defining windows:Fixed Window Size:
Specify a uniform size using
window_size
. The last window on each chromosome may be larger if SNPs are not evenly divisible by the size.Custom Start and End Positions:
Define windows with
physical_pos
(a 2D array of[start, end]
base-pair coordinates).chromosomes
is not provided and the dataset has only one chromosome, all windows are assumed to belong to that chromosome.chromosomes
is missing, an error will be raised.window_sizes
to store the SNP count per window.Matching Existing Windows:
Reuse window definitions (
physical_pos
,chromosomes
,window_sizes
) from an existinglaiobj
.