gene_info_deal.sh not working

[jusail]

Could any one please let me know why the script is not running properly for me when trying to extract the protein sequences after gene prediction using prodigal

my command was
bash ..//../script/gene_info_deal.sh allSample_protein.faa

and i got a output like this
threads:40
MEM:173789
allSample_protein.faa
Traceback (most recent call last):
File "", line 16, in
AttributeError: 'NoneType' object has no attribute 'groups'

there is no isssue with the protein fasta file. the gene prediction run was complete.

[zhouyunyan]

Maybe the python version is wrong, please check it. I remember that python 2 is required.

…

------------------ 原始邮件 ------------------ 发件人: "zhouyunyan/PIGC" ***@***.***>; 发送时间: 2022年7月10日(星期天) 上午9:08 ***@***.***>; ***@***.***>; 主题: [zhouyunyan/PIGC] gene_info_deal.sh not working (Issue #4) Could any one please let me know why the script is not running properly for me when trying to extract the protein sequences after gene prediction using prodigal my command was bash ..//../script/gene_info_deal.sh allSample_protein.faa and i got a output like this threads:40 MEM:173789 allSample_protein.faa Traceback (most recent call last): File "", line 16, in AttributeError: 'NoneType' object has no attribute 'groups' there is no isssue with the protein fasta file. the gene prediction run was complete. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[jusail]

I am using python 2.7.15. Is that still an issue

[jusail]

Issue got resolved. I have chosen wrong bash command from the script folder. sorry

[zhouyunyan]

OK