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test.sh
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test.sh
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#!/bin/bash
#
# Copyright (C) 2021, Northwestern University and Argonne National Laboratory
# See COPYRIGHT notice in top-level directory.
#
# Exit immediately if a command exits with a non-zero status.
set -e
DECOMP_REPLAY="utils/decomp_copy"
# BPSTAT="utils/bpstat"
#DECOMPS=()
VERBOSE=0
EXEC="src/e3sm_io"
if test "x$#" = x0 ; then
RUN=""
VERBOSE=1
else
RUN="${TESTMPIRUN} -n $1"
fi
CONFIGS=("map_f_case_16p" "map_g_case_16p" "map_i_case_16p")
APIS=()
if test "x${ENABLE_PNC}" = x1 ; then
APIS+=("pnetcdf canonical" "pnetcdf blob")
if test "x${LD_LIBRARY_PATH}" = x ; then
export LD_LIBRARY_PATH=${PNETCDF_LIB_PATH}
else
export LD_LIBRARY_PATH=${PNETCDF_LIB_PATH}:${LD_LIBRARY_PATH}
fi
fi
if test "x${ENABLE_HDF5}" = x1 ; then
APIS+=("hdf5 canonical" "hdf5 blob")
if test "x${LD_LIBRARY_PATH}" = x ; then
export LD_LIBRARY_PATH=${HDF5_LIB_PATH}
else
export LD_LIBRARY_PATH=${HDF5_LIB_PATH}:${LD_LIBRARY_PATH}
fi
if test "x${ENABLE_LOGVOL}" = x1 ; then
APIS+=("hdf5_log log")
if test "x${LOGVOL_LIB_SHARED}" = x1 ; then
APIS+=("hdf5 log")
export LD_LIBRARY_PATH=${LOGVOL_LIB_PATH}:${LD_LIBRARY_PATH}
fi
fi
if test "x${HDF5_HAVE_MULTI_DATASET_API}" = x1 ; then
APIS+=("hdf5_md canonical")
fi
DECOMPS+=("hdf5 h5")
fi
if test "x${ENABLE_ADIOS2}" = x1 ; then
APIS+=("adios blob")
if test "x${LD_LIBRARY_PATH}" = x ; then
export LD_LIBRARY_PATH=${ADIOS2_LIB_PATH}
else
export LD_LIBRARY_PATH=${ADIOS2_LIB_PATH}:${LD_LIBRARY_PATH}
fi
DECOMPS+=("bp bp")
fi
if test "x${ENABLE_NETCDF4}" = x1 ; then
APIS+=("netcdf4 canonical")
if test "x${LD_LIBRARY_PATH}" = x ; then
export LD_LIBRARY_PATH=${HDF5_LIB_PATH}:${NETCDF4_LIB_PATH}
else
export LD_LIBRARY_PATH=${HDF5_LIB_PATH}:${NETCDF4_LIB_PATH}:${LD_LIBRARY_PATH}
fi
if test "x${ENABLE_LOGVOL}" = x1 && test "x${LOGVOL_LIB_SHARED}" = x1 ; then
APIS+=("netcdf4 log")
fi
DECOMPS+=("netcdf4 nc4")
fi
mkdir -p ${TESTOUTDIR}
# Convert decomposition files from CDF5 format to others
# unset HDF5_PLUGIN_PATH
# unset HDF5_VOL_CONNECTOR
# for DECOM in "${DECOMPS[@]}" ; do
# dc=($DECOM)
# api=${dc[0]}
# for CONFIG in "${CONFIGS[@]}" ; do
# IN_FILE=$srcdir/datasets/${CONFIG}.nc
# OUT_FILE=datasets/${CONFIG}.${dc[1]}
# if test -e $OUT_FILE ; then
# if test $VERBOSE = 1 ; then echo "$OUT_FILE already exist"; fi
# else
# if test $VERBOSE = 1 ; then echo "Convert $IN_FILE into $OUT_FILE"; fi
# CMD="${DECOMP_REPLAY} -a ${api} -i ${IN_FILE} -o ${OUT_FILE}"
# if test $VERBOSE = 1 ; then echo "CMD=$CMD"; fi
# $CMD
# if test "x${api}" = xbp ; then
# CMD="mv -f ${OUT_FILE}.dir/${CONFIG}.${dc[1]}.0 ${OUT_FILE}"
# if test $VERBOSE = 1 ; then echo "CMD=$CMD"; fi
# $CMD
# CMD="rm -rf ${OUT_FILE}.dir"
# if test $VERBOSE = 1 ; then echo "CMD=$CMD"; fi
# $CMD
# fi
# fi
# done
# done
# if test $VERBOSE = 1 ; then echo ""; fi
for API in "${APIS[@]}" ; do
ap=($API)
for CONFIG in "${CONFIGS[@]}" ; do
IN_FILE="${srcdir}/datasets/${CONFIG}"
OUT_FILE_BASE="${TESTOUTDIR}/${ap[0]}_${ap[1]}_${CONFIG}"
if test "x${ap[0]}" = xpnetcdf ; then
FILE_EXT="nc"
IN_FILE+=".${FILE_EXT}"
elif test "x${ap[0]}" = xnetcdf4 ; then
FILE_EXT="nc4"
saved_HDF5_PLUGIN_PATH=$HDF5_PLUGIN_PATH
saved_HDF5_VOL_CONNECTOR=$HDF5_VOL_CONNECTOR
if test "x${ap[1]}" = xlog ; then
# This option requires the two VOL environment variables to be set.
export HDF5_PLUGIN_PATH="$LOGVOL_LIB_PATH"
export HDF5_VOL_CONNECTOR="LOG under_vol=0;under_info={}"
# Decomposition file must be read with native VOL, use nc file
IN_FILE+=".nc"
else
IN_FILE+=".${FILE_EXT}"
unset HDF5_PLUGIN_PATH
unset HDF5_VOL_CONNECTOR
fi
elif test "x${ap[0]:0:4}" = xhdf5 ; then # hdf5, hdf5_log, or hdf5_md
FILE_EXT="h5"
IN_FILE+=".${FILE_EXT}"
elif test "x${ap[0]}" = xadios ; then
FILE_EXT="bp"
IN_FILE+=".${FILE_EXT}"
fi
# construct real output file names
OUT_FILE="${OUT_FILE_BASE}.${FILE_EXT}"
if test $CONFIG = map_f_case_16p || test $CONFIG = map_i_case_16p ; then
REAL_OUT_FILE="${OUT_FILE_BASE}_h0.${FILE_EXT} ${OUT_FILE_BASE}_h1.${FILE_EXT}"
# if test "x${ap[0]}" = xadios ; then
# The line below is for BP3
# REAL_OUT_FILE="${OUT_FILE}_h0.${FILE_EXT} ${OUT_FILE}_h1.${FILE_EXT}"
# fi
elif test $CONFIG = map_g_case_16p ; then
REAL_OUT_FILE="${OUT_FILE_BASE}.${FILE_EXT}"
fi
CMD="${RUN} ${EXEC} -k -a ${ap[0]} -r 2 -x ${ap[1]} -y 2 -o ${OUT_FILE} ${IN_FILE}"
echo "CMD = ${CMD}"
${CMD}
# run read operations (currently support pnetcdf, netcdf4 and canonical only)
# Disable read for netcdf4 as it is extremely slow.
if test "x${ap[1]}" = xcanonical && test "x${ap[0]}" == xpnetcdf ; then
CMD="${RUN} ${EXEC} -k -a ${ap[0]} -r 2 -x ${ap[1]} -y 2 -i ${OUT_FILE} ${IN_FILE}"
echo "CMD = ${CMD}"
${CMD}
fi
if test "x${ap[0]}" = xnetcdf4 ; then
export HDF5_PLUGIN_PATH=$saved_HDF5_PLUGIN_PATH
export HDF5_VOL_CONNECTOR=$saved_HDF5_VOL_CONNECTOR
fi
# test replay on blob files
if test "x${ap[1]}" = xblob ; then
if test "x${ap[0]}" = xpnetcdf ; then
PNETCDF_REPLAY="utils/pnetcdf_blob_replay"
if test $CONFIG = map_f_case_16p || test $CONFIG = map_i_case_16p ; then
rm -f ${OUT_FILE_BASE}_h0.${FILE_EXT}.can
CMD="${RUN} ${PNETCDF_REPLAY} -i ${OUT_FILE_BASE}_h0.${FILE_EXT} -o ${OUT_FILE_BASE}_h0.${FILE_EXT}.can"
echo "CMD = ${CMD}"
${CMD}
rm -f ${OUT_FILE_BASE}_h1.${FILE_EXT}.can
CMD="${RUN} ${PNETCDF_REPLAY} -i ${OUT_FILE_BASE}_h1.${FILE_EXT} -o ${OUT_FILE_BASE}_h1.${FILE_EXT}.can"
echo "CMD = ${CMD}"
${CMD}
elif test $CONFIG = map_g_case_16p ; then
rm -f ${OUT_FILE_BASE}.${FILE_EXT}.can
CMD="${RUN} ${PNETCDF_REPLAY} -i ${OUT_FILE_BASE}.${FILE_EXT} -o ${OUT_FILE_BASE}.${FILE_EXT}.can"
echo "CMD = ${CMD}"
${CMD}
fi
fi
fi
# check ADIOS BP files
if test "x$BPSTAT" != x && test "x${ap[0]}" = xadios ; then
if test $CONFIG = map_f_case_16p || test $CONFIG = map_i_case_16p ; then
CMD="${BPSTAT} ${OUT_FILE_BASE}_h0.${FILE_EXT}"
echo "CMD = ${CMD}"
${CMD}
CMD="${BPSTAT} ${OUT_FILE_BASE}_h1.${FILE_EXT}"
echo "CMD = ${CMD}"
${CMD}
elif test $CONFIG = map_g_case_16p ; then
CMD="${BPSTAT} ${OUT_FILE_BASE}.${FILE_EXT}"
echo "CMD = ${CMD}"
${CMD}
fi
fi
# for log strategy, check if the output files are log-based VOL files
if test "x${ap[1]}" = xlog ; then
# disable all VOLs to avoid debug message messing with the output of h5ldump
saved_HDF5_VOL_CONNECTOR=
if test "x$HDF5_VOL_CONNECTOR" != x ; then
saved_HDF5_VOL_CONNECTOR=$HDF5_VOL_CONNECTOR
unset HDF5_VOL_CONNECTOR
fi
for f in ${REAL_OUT_FILE} ; do
echo "CMD = $H5LDUMP -k $f"
FILE_KIND=`$H5LDUMP -k $f`
if test "x${FILE_KIND}" != xHDF5-LogVOL ; then
echo "Error: Output file $f is not Log VOL, but ${FILE_KIND}"
exit 1
else
echo "Success: Output file $f is ${FILE_KIND}"
# test h5lreplay
CMD="${H5LREPLAY} -i ${f} -o ${f}_replay.h5"
echo "CMD = ${CMD}"
echo "Success: test h5lreplay on file $f"
echo ""
fi
done
# restore HDF5_VOL_CONNECTOR for next run
if test "x$saved_HDF5_VOL_CONNECTOR" != x ; then
export HDF5_VOL_CONNECTOR=$saved_HDF5_VOL_CONNECTOR
fi
fi
# delete the output files/folder
for f in ${REAL_OUT_FILE} ; do
CMD="rm -rf $f*"
echo "CMD = ${CMD}"
${CMD}
done
echo ""
echo "================================================================"
done
done