From 5dcdcb1c9be4585bd109ee814faee6f184e173b6 Mon Sep 17 00:00:00 2001 From: zhangrengang Date: Wed, 25 Sep 2024 21:26:55 +0800 Subject: [PATCH] update readme --- SOI-tools.md | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/SOI-tools.md b/SOI-tools.md index c2f9851..fa37f24 100644 --- a/SOI-tools.md +++ b/SOI-tools.md @@ -1,9 +1,10 @@ #### Macro-synteny phylogeny #### Before run the pipeline: -1. install the lasest verion of [SOI](https://github.com/zhangrengang/orthoindex#installation) (not the release version); -2. completed the [example pipeline] (https://github.com/zhangrengang/evolution_example) to get the orthologous synteny file `collinearity.ortho`; -3. prepare file `species.config` to set the expected subgenome numbers for targeted species (TAB seperated): +1. install the lasest verion of [SOI](https://github.com/zhangrengang/orthoindex#installation) by `python3 setup.py install`, +and have a check: `which soi-syn`; +2. completed the [example pipeline](https://github.com/zhangrengang/evolution_example) to get the orthologous synteny file `collinearity.ortho`; +3. prepare file `species.config` to set the expected subgenome numbers for the targeted species (TAB seperated): ``` Vitis_vinifera 1 Aralia_elata 2