diff --git a/soi/OrthoFinder.py b/soi/OrthoFinder.py index 4169ad4..302e3da 100644 --- a/soi/OrthoFinder.py +++ b/soi/OrthoFinder.py @@ -661,7 +661,7 @@ def get_homologs(self, sps=None, sp1=None, sp2=None, **kargs): continue ortho_pairs.add( (g1, g2) ) # inparalogs return ortho_pairs -def test_sonicparanoid(ResultsDir=sys.argv[2]): +def test_sonicparanoid(ResultsDir): for g1, g2 in SonicParanoid(ResultsDir).get_homologs(): print(g1, g2) class SonicParanoidOrthologs: