| layout | title | date | categories | tags |
|---|---|---|---|---|
post |
02 - Differential Expression - CEABiGR mRNA |
2024-01-17 |
mRNA results status |
CEABiGR |
Differential expression runs with DESeq2 for coding sequences. Link to code.
This wasn't the most interesting story. There are many DEGs, but appears to be mostly sex based. Super small number of differentially expressed DEGs when males and females are run separately. Continues to fit the story that most differences are sex-based. Can look at annotation to get a better idea of what the DEGs found actually are.
- 36242 significantly differentially expressed coding sequences
- Clustered by sex
- 25 significantly differentially expressed mRNAs
- Clustered by treatment group
- 107 significantly differentially expressed mRNAs
- Clustered by treatment group except for one, view below:
