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install procedure for r4.0 in linux

sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9

R base

https://rtask.thinkr.fr/installation-of-r-3-5-on-ubuntu-18-04-lts-and-tips-for-spatial-packages/

sudo apt purge r-base* r-recommended r-cran-*
sudo apt autoremove
sudo apt update

sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
sudo apt update
sudo add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/'
sudo apt install r-base r-base-core r-recommended

rstan

https://github.com/stan-dev/rstan/wiki/Installing-RStan-on-Linux

Note: 4.0 seems too early https://www.digitalocean.com/community/tutorials/how-to-install-r-on-ubuntu-18-04-quickstart

Bulk install (re-install) of packages

pkgs <- installed.packages()
ii <- is.na(pkgs[, "Priority"])
pkgs <- pkgs[ii, 1]
install.packages(pkgs)

package libcurl was not found (pkg-config)

  • libcurl is not an R package, but a linux package!
sudo apt-get install libcurl4-openssl-dev libssl libxml2-dev libgdal-dev

After this, perform in R

install.package('curl')
install.package('V8')

Install RStan from source

  • after r-cran-v8 errors unsolved, I installed it this way
install.packages("rstan", type = "source")

Windows 10 install for R-4.0.2

  1. remove previous installation remove/install programs
  2. Download and install R-4.0.2-win.exe
  3. Download and install RStudio-1.3.1056.exe
  4. open RStudio
  5. pkgbuild::has_build_tools(debug = TRUE)
  • click 'Yes' if asked to install tools, which installs 'RTools' in C:.
  1. Configuration of C++ toolchain (https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started)
dotR <- file.path(Sys.getenv("HOME"), ".R")
if (!file.exists(dotR)) dir.create(dotR)
M <- file.path(dotR, ifelse(.Platform$OS.type == "windows", "Makevars.win", "Makevars"))
if (!file.exists(M)) file.create(M)
cat("\nCXX14FLAGS=-O3 -march=native -mtune=native",
    if( grepl("^darwin", R.version$os)) "CXX14FLAGS += -arch x86_64 -ftemplate-depth-256" else 
    if (.Platform$OS.type == "windows") "CXX11FLAGS=-O3 -march=corei7 -mtune=corei7" else
    "CXX14FLAGS += -fPIC",
    file = M, sep = "\n", append = TRUE)
  1. Install RStan
install.packages("rstan", repos = "https://cloud.r-project.org/", dependencies = TRUE)
  1. Try shools example in https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started

ubuntu 18.04 for R 4.0+

sudo add-apt-repository ppa:c2d4u.team/c2d4u4.0+
sudo apt update

sudo vi /etc/apt/sources.list and add

deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran40/
  1. install R 4.0+ version
sudo apt-get update
sudo apt-get install r-base
sudo apt-get install r-base-dev
  1. remove all files in /usr/local/lib/R/shared...