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libraries.R
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libraries.R
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#*********************************************
# Loading libraries #
#*********************************************
library(flextable)
library(data.table)
library(plyr) # must be loaded BEFORE dplyr/tidyverse
library(gdata) # read.xls
library(zoo)
library(readxl)
library(stringr)
library(readxl)
# library(XLConnect) # slow but convenient because it reads ranges; NOTE: I had to install Java 64-bit on Windows 10 64-bit to load properly
library(magrittr) # use %<>%
library(scales)
# library(xlsx) # writing xlsx files
# library("btools")
# parallel computing
library(foreach)
library(doParallel)
library(microbenchmark)
# Tydiverse and other RStudio packages
library(tidyverse) # loads ggplot2, tibble, tidyr, readr, purrr, dplyr, forcats
library(knitr)
library(gt)
options(dplyr.print_min = 100) # default is 10
options(dplyr.print_max = 100) # default is 20
source(paste0(here::here(),"/Functions.R"))
#*********************************************
# Colors and figure themes #
#*********************************************
# Colors
{
RIG.blue <- "#003598"
RIG.red <- "#A50021"
RIG.green <- "#009900"
RIG.yellow <- "#FFFF66"
RIG.purple <- "#9966FF"
RIG.yellow.dark <- "#ffc829"
RIG.orange <- "#fc9272"
demo.color6 <- c(RIG.red,
RIG.orange,
RIG.purple,
RIG.green ,
RIG.blue,
RIG.yellow.dark)
RIG.theme <- function(){
theme(panel.grid.major.x = element_line(size = 0.3, color = "gray90"), #element_blank(),
panel.grid.minor.x = element_blank(),
panel.grid.minor.y = element_blank(),
panel.grid.major.y = element_line(size = 0.5, color = "gray80"),
plot.title=element_text(hjust=0.5),
plot.subtitle=element_text(hjust=0.5),
plot.caption=element_text(hjust=0, size = 9))
}
}
#*******************************************************************************
# Local Tools #
#*******************************************************************************
read_excel_tblInfo <- function(fileName, sheetName, Range = "a2:b4"){
read_excel(fileName, sheet = sheetName, range = Range, col_names = c("var", "value"))
}
# read_excel_range <- function(fileName, sheetName, Range = "a2:b4" ){
#
# tblInfo <- read_excel_tblInfo(fileName, sheetName, Range = Range)
# df <- read_excel(fileName, sheet = sheetName, range = tblInfo[tblInfo$var == "cell_range", "value"][[1]] )
#
# list(df = df,
# tblInfo = tblInfo)
#
# }
read_excel_range <- function(fileName, sheetName, Range = "a2:b4" ){
tblInfo <- read_excel_tblInfo(fileName, sheetName, Range = Range)
df <- read_excel(fileName, sheet = sheetName, range = tblInfo[tblInfo$var == "cell_range", "value"][[1]] )
tblInfo <- tblInfo$value %>% split(tblInfo$var)
list(df = df,
tblInfo = tblInfo)
}
#
#
# #*******************************************************************************
# # Tools and functions ####
# #*******************************************************************************
#
# source(here::here("Functions.R"))
#
#
save_figure <- function(fig_ob, fig_folder, fig_type = "png", ...){
figure_name <- deparse(substitute(fig_ob))
ggsave(paste0(fig_folder, figure_name, ".", fig_type ), fig_ob, ... )
}
#
#
# get_results <- function(IO_folder, Pattern = "^Outputs"){
#
# fn <- function(x) {
# load(paste0(IO_folder, "/", x))
# return(outputs_list$results)
# }
#
# file_select <- dir(IO_folder, Pattern)
# results_all <- adply(file_select, 1, fn) %>% select(-X1)
# }
#
#
#
get_nyearMax <- function(x) max(x[-1] - x[1])
get_nyearMin <- function(x) min(x[-1] - x[1])
#
#
#
# #*******************************************************************************
# # Colors and figure themes ####
# #*******************************************************************************
#
# # Colors
{
RIG.blue <- "#003598"
RIG.red <- "#A50021"
RIG.green <- "#009900"
RIG.yellow <- "#FFFF66"
RIG.purple <- "#9966FF"
RIG.yellow.dark <- "#ffc829"
RIG.orange <- "#fc9272"
demo.color6 <- c(RIG.red,
RIG.orange,
RIG.purple,
RIG.green ,
RIG.blue,
RIG.yellow.dark)
theme_yy <- function(...){
theme_bw(...) +
theme(panel.grid.major.x = element_line(size = 0.3, color = "gray90"), #element_blank(),
panel.grid.minor.x = element_blank(),
panel.grid.minor.y = element_blank(),
panel.grid.major.y = element_line(size = 0.5, color = "gray80"),
plot.title=element_text(hjust=0.5),
plot.subtitle=element_text(hjust=0.5),
plot.caption=element_text(hjust=0, size = 9),
panel.background = element_rect(fill = "grey98",
colour = "grey98",
size = 0.5, linetype = "solid")
)
}
}