diff --git a/CHANGES.rst b/CHANGES.rst index 678142aaa..ef3d3eb42 100644 --- a/CHANGES.rst +++ b/CHANGES.rst @@ -1,3 +1,66 @@ +0.4 (August 17, 2020) +===================== +This release adds several new registration templates and techniques, providing +major improvements in bundle segmentation with waypoint ROIs. In addition, new +visualization methods using plotly were introduced, to generate HTML-based +visualizations of bundles, and to compare longitudinal measurements. This version +relies on pybids for parsing of input datasets. Many other bug fixes and improvements. + + * Throw error when backend is misnamed (#363) + * Export what is natural to the viz library (#361) + * Upgrade FURY to support newer VTK (#359) + * Allow for selecting subject(s) by position after randomization (#352) + * Ignore positional arguments in non AFQ functions for docstring parser, add test (#354) + * Auto doc fix (#350) + * Clips streamlines by the inclusion ROI. (#159) + * S3 Bids Fetch Fixes (#340) + * BF: AFQ derivatives should be saved inside "derivatives/afq" (#348) + * Compare profiles from CSVs (#317) + * New CLI / Config (#310) + * Update versions of scipy and vtk. (#342) + * Generating a wm mask out of multiple scalars (#330) + * Add classes for fetching a BIDS-compliant study on S3 (#290) + * Remove this section of the pyproject. (#337) + * Setup with config redux ... redux (#326) + * Updates DIPY url used in metadata. (#333) + * b0_threshold default updated (#331) + * Make power maps the default for registration (#329) + * b value selection fix and test, power map test, models moved to own submodule (#322) + * Revert "Adds a setup.cfg file and cleans up metadata and other hacks" (#324) + * Adds a setup.cfg file and cleans up metadata and other hacks (#320) + * Allow user to customize registration targets, fix some other aspects of registration (#283) + * Bvals preallocation (#63) + * Remove hcc from defaults (#315) + * export_all function (#312) + * Kaleido instead of orcas (#311) + * Viz module uses fury and plotly (#289) + * Allow study selection for fetch_hcp (#300) + * RF: Speed up testing by moving viz test into API run. (#302) + * Pybids (#284) + * Plot tract profiles in CLI (#280) + * Remove cloukdnot examples (#297) + * Make save intermediates folder if it does not already exist (#296) + * Remove six (#295) + * use rapidfuzz instead of fuzzywuzzy (#266) + * Extra requirements feature added, consistent with current requirement files (#291) + * Bump pybids to 0.11.1 (#293) + * make_bundle_dict should only be called after reg_template is settled (#281) + * Add instructions for disabling github actions on forked repos. (#287) + * Fix two bugs, makes tests work (#282) + * Visualize all tract profiles for a scalar in one plot (#268) + * Profile format changed to be less tall and more wide, like mAFQ (#279) + * Added random_seed parameter in tractography (#270) + * Bring fetch_hcp into alignment with other fetch functions (#272) + * Api File Naming (#269) + * Fixed numpydoc version to 0.9.2 (#271) + * Use xvfb_wrapper for aws (#257) + * Save mask as float32, so that we can open it in MI-Brain. (#260) + * Update reqs 253 (#254) + * Use valid value for Zenodo license field. (#249) + * BF: Use Tableau 20 colors for the 20 waypoint-defined bundles. (#251) + * BF: Actually use the user-provided path for saving HCP files. (#250) + + 0.3 (April 21, 2020) ==================== This release includes several important fixes and enhancements. In particular,