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Could you open an issue with an example? KiKit should not refill your zone ever (for exactly these reasons). I briefly checked the source code and I see no way it can refill existing zones on the PCB. The only zones that are refilled are the zones added by KiKit. Having a concrete example will help us to track down the problem. |
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When creating the single base PCB, you may define fill zones using an outline that's the same as the board outline, relying on the zone's clearance settings to reduce the zone away from the edge of the board.
When Kikit copies that board to the panel, Kikit preserves the current state of the fill, so it's initially fine.
However, if you selected for Kikit to use VCuts, there are no longer Edge.Cut lines to repel the fill zone, so if you then cause Kicad to recalc the fill on the panel, the fill runs right up to the actual fill zone boundaries you drew.
The moral of the story is: If you intend to use VCuts, then draw a fill zone boundary that's inside the board edges by the desired amount, and don't rely on the zone's clearances at the board edges.
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