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An issue with muscle #4

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camilogarciabotero opened this issue Jan 23, 2020 · 1 comment

camilogarciabotero commented Jan 23, 2020

Hi,

I followed the next steps and got an issue with apparently muscle in the pipeline execution:

Installed PhySpeTree with pip install PhySpeTree in my base conda env.
Create a dir and a text file with the "organism_example_list.txt" file provided in the repo.
Run the PhySpeTree -i organism_example_list.txt line as suggested in the README and got the following error:

/miniconda3/lib/python3.7/site-packages/physpetool/softwares/muscle: cannot execute binary file

Finally got the following messages:

The text was updated successfully, but these errors were encountered:

Owner

yangfangs commented Feb 10, 2020

Hi, Camilo

I am sorry PhySpeTree not pass test with miniconda environment.

PhySpeTree design for linux operating system. If you are using PhySpeTree in the window OS we recommend using docker technology for installation.

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