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Welcome to metabolike 👋

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PyPI release Documentation status for stable version PyTest workflow status Code coverage CodeQL analysis Package license Code styled with Black GitHub commits since latest release (by date) for main branch

An alternative way to explore metabolic networks.

Metabolike lets you transform SBML metabolic models into queryable, interactive graphs.

Installation

pip install -U metabolike

For more details, please visit the documentation site.

Feature highlights

  • Parser that can read any valid SBML model and write relevant entities into a graph database.
  • Special support for BRENDA and BioCyc data files.
  • A Streamlit app for novel metabolic route detection with omics-data integration.

License

Metabolike is completely free and open-source and licensed under the GPL-3.0 license.