NAMESPACE

# Generated by roxygen2: do not edit by hand

export(.readDataTable)
export(AddErrMsg)
export(ApplyAbundanceFilter)
export(ApplyAbundanceFilterMeta)
export(ApplyMetaboFilter)
export(ApplyVarianceFilter)
export(ApplyVarianceFilterMeta)
export(CalculateHyperScore)
export(CheckMetaDataIntegrity)
export(CompareSummaryStats)
export(CoreMicrobeAnalysis)
export(CreateFooter)
export(CreateMDPRnwReport)
export(CreatePhyloseqObj)
export(CreatePhyloseqObjMeta)
export(CreateRHistAppendix)
export(CreateSDPRnwReport)
export(CrossReferencing)
export(FeatureCorrelation)
export(GenerateTemplates)
export(GetColorSchema)
export(GetDataForPie)
export(GetErrMsg)
export(GetFinalNameMap)
export(GetGeneListStat)
export(GetMapTable)
export(GetORATable)
export(GetRFConf.Table)
export(GetSeriesColors)
export(GetSigTable.Corr)
export(GetSigTable.LEFSE)
export(GetSigTable.METAGENOSEQ)
export(GetSigTable.RNASeq)
export(GetSigTable.UNIVAR)
export(Init.DataMeta)
export(Init.mbSetObj)
export(Match.Pattern)
export(MergeDatasets)
export(PCoA3D.Anal)
export(PCoA3DAnal.16SRef)
export(Perform16FunAnot_mem)
export(PerformAlphaDiversityComp)
export(PerformBatchCorrection)
export(PerformBetaDiversity)
export(PerformCategoryComp)
export(PerformDEAnalyse)
export(PerformKOEnrichAnalysis_KO01100)
export(PerformKOProjection)
export(PerformKOmapping)
export(PerformLefseAnal)
export(PerformMantelTest)
export(PerformMetaEffectSize)
export(PerformMetaboNormalization)
export(PerformMetagenomeSeqAnal)
export(PerformNetworkCorrelation)
export(PerformNormalization)
export(PerformNormalizationMeta)
export(PerformPartialCorr)
export(PerformRNAseqDE)
export(PerformRarefaction)
export(PerformRefDataMapping)
export(PerformUnivarTest)
export(PlotAlphaBoxData)
export(PlotAlphaData)
export(PlotBetaSummary)
export(PlotBoxData)
export(PlotBoxDataCorr)
export(PlotCorr)
export(PlotDataPieFromPie)
export(PlotEnrichNet.Overview)
export(PlotFunAnotSummary)
export(PlotFunctionStack)
export(PlotGroupPieGraph)
export(PlotHeatmap)
export(PlotImpVarLEfSe)
export(PlotLEfSeSummary)
export(PlotLibSizeView)
export(PlotMetaDensity)
export(PlotMetaPCA)
export(PlotOverallPieGraph)
export(PlotPCAView)
export(PlotPhylogeneticTree)
export(PlotPiechart)
export(PlotRF.Classify)
export(PlotRF.VIP)
export(PlotRareCurve)
export(PlotRarefactionCurve)
export(PlotSampleTaxaAundanceBar)
export(PlotSelectedSample)
export(PlotTaxaAbundanceArea)
export(PlotTaxaAbundanceBarSamGrp)
export(PlotTaxaAundanceBar)
export(PlotTreeGraph)
export(PlotUsrRefPCoA3DScore)
export(PrepareEnrichNet)
export(PrepareHeatTreePlot)
export(PrepareHeatTreePlotDataParse_cmf)
export(PrepareHeatTreePlotDataParse_cmf_diff_table)
export(PrepareHeatTreePlotDataParse_cmf_plot)
export(PrepareMergedData)
export(PreparePCA4Shotgun)
export(PreparePDFReport)
export(PrepareQueryJson)
export(RF.Anal)
export(Read16SAbundData)
export(Read16SAbundDataMeta)
export(Read16SBiomData)
export(Read16STabData)
export(Read16STaxaTable)
export(Read16STaxaTableMeta)
export(ReadMetabolicTable)
export(ReadMothurData)
export(ReadSampleTable)
export(ReadSampleTableMeta)
export(ReadSampleTableMetaInd)
export(ReadShotgunBiomData)
export(ReadShotgunTabData)
export(ReadTreeFile)
export(RunFastSpar)
export(SanityCheckData)
export(SanityCheckDataMeta)
export(SanityCheckMetData)
export(SanityCheckSampleData)
export(SanityCheckSampleDataMeta)
export(SavePiechartImg)
export(SetDataTypeOfMeta)
export(SetMetaAttributes)
export(SetModuleType)
export(SetTaxonSetLib)
export(Setup.MapData)
export(UpdateConfItems)
export(UpdateListInput)
export(UpdatePieData)
export(UpdateSampleItems)
import(DESeq2)
import(MASS)
import(RColorBrewer)
import(Tax4Fun)
import(ape)
import(biomformat)
import(data.table)
import(edgeR)
import(genefilter)
import(ggfortify)
import(ggplot2)
import(grid)
import(gridExtra)
import(igraph)
import(metacoder)
import(metagenomeSeq)
import(pheatmap)
import(phyloseq)
import(ppcor)
import(randomForest)
import(reshape)
import(stringr)
import(taxa)
import(vegan)
import(viridis)
import(xtable)
importFrom(grDevices,colorRampPalette)