Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

bulq RNA-seq nomalization method? #14

Open
imrankhan27 opened this issue May 18, 2022 · 1 comment
Open

bulq RNA-seq nomalization method? #14

imrankhan27 opened this issue May 18, 2022 · 1 comment

Comments

@imrankhan27
Copy link

Is there a specific requirement related to the normalization method for bulqRNA-seq data in immuCC? like TPM, FPKM, RPKM, or just count matrix of each gene.
Thank you!
@chenziyi
Copy link
Contributor

As described in our paper and github, the quartile normalization was used here. Sorry, I have not try it on other normalization methods.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@chenziyi @imrankhan27