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Having trouble running MarkerScanner #6

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dcdanko opened this issue Dec 9, 2016 · 1 comment
Open

Having trouble running MarkerScanner #6

dcdanko opened this issue Dec 9, 2016 · 1 comment

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@dcdanko
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dcdanko commented Dec 9, 2016

Hello,

I'm having some trouble running MarkerScanner.pl I believe I have all the dependencies installed but I'm a bit lost.

AMPHORA2_home is set

Here's my error message:

$ perl /workdir/users/dcd97/home-dcd97/AMPHORA2/Scripts/MarkerScanner.pl -DNA -Bacteria genomes.fasta                                                                                                             
Error: Failed to open sequence file genomes.fasta.orf for reading                                                                                                                                                 

Can't open 5630.hmmsearch at /workdir/users/dcd97/home-dcd97/AMPHORA2/Scripts/MarkerScanner.pl line 100.
@EdwardN0rt0n
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Do you have permission to use the perl script in this path

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@dcdanko @EdwardN0rt0n