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NEWS.md

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clusterProfiler 3.18.0

  • Bioconductor 3.12 release (2020-10-28, Wed)

clusterProfiler 3.17.5

  • update [[.compareClusterResult (2020-10-14, Wed)

clusterProfiler 3.17.3

  • internal suports of enrichment analyses using WikiPathways (2020-09-09, Wed)
    • enrichWP for ORA analysis
    • gseWP for GSEA analysis
    • get_wp_organisms for listing supported organisms
    • read.gmt.wp for parsing gmt file downloaded from wikiPathways

clusterProfiler 3.17.2

clusterProfiler 3.17.1

clusterProfiler 3.16.0

  • Bioconductor 3.11 release

clusterProfiler 3.15.3

  • incorporate clusterProfiler.dplyr (2020-03-12, Thu)
    • arrange, filter, group_by, mutate, rename, select, slice and summarize

clusterProfiler 3.15.2

  • remove Suggests of KEGG.db as it will be deprecated in Bioconductor 3.11 (2020-01-14, Tue)
  • optimize enrichGO to use less memory (2019-12-13, Fri)
  • re-implement read.gmt without using GSEABase, and my own version is much more fasta :)

clusterProfiler 3.15.1

  • e.g. user can pass fun=enrichGO to compareCluster without quoting enrichGO (2019-12-02, Mon)
  • add keytype and readable info in compareCluster output
  • mv compareClusterResult class defintion to DOSE (2019-11-02, Sat)
  • mv fortify, barplot and dotplot for compareClusterResult to enrichplot.

clusterProfiler 3.14.0

  • Bioconductor 3.10 release

clusterProfiler 3.12.0

  • Bioconductor 3.9 release

clusterProfiler 3.11.1

clusterProfiler 3.10.0

  • Bioconductor 3.8 release

clusterProfiler 3.9.2

  • re-export DOSE::gsfilter and DOSE::setReadable (2018-05-25, Fri)

clusterProfiler 3.9.1

clusterProfiler 3.8.0

  • Bioconductor 3.7 release

clusterProfiler 3.7.1

  • uniprot_get function (2018-01-30, Tue)
  • import enrichplot (2018-01-29, Mon)