- Bioconductor 3.12 release (2020-10-28, Wed)
- update
[[.compareClusterResult
(2020-10-14, Wed)
- internal suports of enrichment analyses using WikiPathways (2020-09-09, Wed)
enrichWP
for ORA analysisgseWP
for GSEA analysisget_wp_organisms
for listing supported organismsread.gmt.wp
for parsing gmt file downloaded from wikiPathways
- use
libcurl
if capable (2020-09-08, Tue)
- bug fixed of
extract_params
(2020-08-18, Tue)
- Bioconductor 3.11 release
- incorporate clusterProfiler.dplyr (2020-03-12, Thu)
- arrange, filter, group_by, mutate, rename, select, slice and summarize
- remove
Suggests
ofKEGG.db
as it will be deprecated in Bioconductor 3.11 (2020-01-14, Tue) - optimize
enrichGO
to use less memory (2019-12-13, Fri) - re-implement
read.gmt
without using GSEABase, and my own version is much more fasta :)
- e.g. user can pass
fun=enrichGO
tocompareCluster
without quotingenrichGO
(2019-12-02, Mon) - add
keytype
andreadable
info incompareCluster
output - mv
compareClusterResult
class defintion toDOSE
(2019-11-02, Sat) - mv
fortify
,barplot
anddotplot
forcompareClusterResult
toenrichplot
.
- Bioconductor 3.10 release
- Bioconductor 3.9 release
asis
parameter in[.compareClusterResult
(2018-12-24, Mon)
- Bioconductor 3.8 release
- re-export
DOSE::gsfilter
andDOSE::setReadable
(2018-05-25, Fri)
- change color scheme of dotplot of compareClusterResult back to red->purple (2018-05-17, Thu)
- Bioconductor 3.7 release
- uniprot_get function (2018-01-30, Tue)
- import enrichplot (2018-01-29, Mon)