diff --git a/ipal/add_ejs.php b/ipal/add_ejs.php
index 5b08dcc..f61b9a3 100644
--- a/ipal/add_ejs.php
+++ b/ipal/add_ejs.php
@@ -65,17 +65,15 @@
     echo "\n<br /> Please use the back button and try again.</body></html>";
     exit;
 }
-$ejs = $DB->get_record('modules', array('name' => 'ejsapp'));
-$ejsid = $ejs->id;// The id for all EJS module activities.
-$ejscoursemodule = $DB->get_record('course_modules', array('instance' => $ejsappid, 'course' => $courseid, 'module' => $ejsid));
-$ejscoursemoduleid = $ejscoursemodule->id;
-$newcode = "src=\"".$CFG->wwwroot."/mod/ipal/viewejs.php?id=$ejscoursemoduleid\" width='600' height='410'>EJS App";
-$newcode = '<iframe '.$newcode.'</iframe>';
+
+require_once('../../mod/ejsapp/external_interface/ejsapp_external_interface.php');
+$ejscode = draw_ejsapp_instance($ejsappid);
+$ejscode = 'EJS<ejsipal>'.$ejscode."</ejsipal>\n<br />";
 echo "\n<be /> Here are the revised question(s):";
 foreach ($qid as $qkey => $qvalue) {
     echo "\n<br /> question $qvalue";
     $questiontext = $DB->get_field('question', 'questiontext', array('id' => $qvalue));
-    $result = $DB->set_field('question', 'questiontext', $newcode.$questiontext, array('id' => $qvalue));
+    $result = $DB->set_field('question', 'questiontext', $ejscode.$questiontext, array('id' => $qvalue));
     $newquestiontext = $DB->get_field('question', 'questiontext', array('id' => $qvalue));
     echo "\n<br />".$newquestiontext;
 }
diff --git a/ipal/edit.php b/ipal/edit.php
index f95964a..8a7b2e4 100644
--- a/ipal/edit.php
+++ b/ipal/edit.php
@@ -331,6 +331,11 @@
 for ($pageiter = 1; $pageiter <= $numberoflisteners; $pageiter++) {
     $quizeditconfig->dialoglisteners[] = 'addrandomdialoglaunch_' . $pageiter;
 }
+// Javascript needed so that the quiz formatting tools will work correctly.
+echo "\n".'<script type="text/javascript">';
+echo "\n"."document.getElementById('page-mod-ipal-edit').id = 'page-mod-quiz-edit';";
+echo "\n</script>";
+
 $PAGE->requires->data_for_js('quiz_edit_config', $quizeditconfig);
 $PAGE->requires->js('/question/qengine.js');
 $module = array(
@@ -357,7 +362,8 @@
 echo '<div class="header"><div class="title"><h2>';
 // Offer the opportunity to add an EJS simulation to a question.
 if ($DB->count_records('modules', array('name' => 'ejsapp'))) {
-    echo "\n<br />Click <a href='".$CFG->wwwroot."/mod/ipal/ejs_ipal.php?cmid=$cmid'>to add EJS Apps</a>";
+    echo "\n<br />Click <a href='".$CFG->wwwroot."/mod/ipal/ejs_ipal.php?cmid=$cmid' style='color: rgb(255,255,255)'>
+        to add EJS Apps</a>";
 }
 require_once($CFG->dirroot . '/mod/ipal/quiz/compadre_access_form.php');
 // Create a generic multichoice question and a generic essay question if they don't exist in this course.
diff --git a/ipal/ejs_ipal.php b/ipal/ejs_ipal.php
index a43876c..5557efb 100644
--- a/ipal/ejs_ipal.php
+++ b/ipal/ejs_ipal.php
@@ -67,9 +67,12 @@
 $otherquestions[0] = '';
 foreach ($qcategories as $categoryid => $value) {
     $questions = $DB->get_records('question', array('category' => $categoryid));
+    $ejsapp = 'ejsapp';
     foreach ($questions as $qid => $question) {
         if (preg_match("/viewejs/", $question->questiontext)) {
             $hasejs[$qid] = $question->name;
+        } else if (preg_match("/$ejsapp\/jarfiles/", $question->questiontext)) {
+            $hasejs[$qid] = $question->name;
         } else if (in_array($qid, $ipalquestions)) {
             $thisipal[$qid] = $question->name;
         } else {
diff --git a/ipal/locallib.php b/ipal/locallib.php
index 27b7cd2..d819712 100644
--- a/ipal/locallib.php
+++ b/ipal/locallib.php
@@ -185,6 +185,8 @@ function ipal_get_questions() {
 
         $aquestions = $DB->get_record('question', array('id' => $q));
         if (isset($aquestions->questiontext)) {
+            // Removing any EJS from the ipal/view.php page. Note: A dot does not match a new line without the s option.
+            $aquestions->questiontext = preg_replace("/EJS<ejsipal>.+<\/ejsipal>/s", "EJS ", $aquestions->questiontext);
             $pagearray2[] = array('id' => $q, 'question' => strip_tags($aquestions->questiontext),
                 'answers' => ipal_get_answers($q));
         }
@@ -441,9 +443,9 @@ function ipal_display_instructor_interface($cmid) {
             echo "<br>";
             echo "<br>";
             echo "<iframe id= \"graphIframe\" src=\"graphics.php?ipalid=".$ipal->id."\" height=\"535\" width=\"723\"></iframe>";
-            echo "<br><br><a onclick=\"window.open('popupgraph.php?ipalid=".$ipal->id."', '',
-                    'width=620,height=450,toolbar=no,location=no,menubar=no,copyhistory=no,status=no,
-                    directories=no,scrollbars=yes,resizable=yes');
+            echo "<br><br><a onclick=\"newwindow=window.open('popupgraph.php?ipalid=".$ipal->id."', '',
+                    'width=620,height=450,toolbar=no,location=no,menubar=no,copyhistory=no,status=no,";
+            echo "directories=no,scrollbars=yes,resizable=yes');
                     return false;\"
                     href=\"popupgraph.php?ipalid=".$ipal->id."\" target=\"_blank\">Open a new window for the graph.</a>";
         }
@@ -469,6 +471,8 @@ function ipal_show_current_question() {
     if ($DB->record_exists('ipal_active_questions', array('ipal_id' => $ipal->id))) {
         $question = $DB->get_record('ipal_active_questions', array('ipal_id' => $ipal->id));
         $questiontext = $DB->get_record('question', array('id' => $question->question_id));
+        // Removing any EJS from the ipal/view.php page. Note: A dot does not match a new line without the s option.
+        $questiontext->questiontext = preg_replace("/EJS<ejsipal>.+<\/ejsipal>/s", "EJS ", $questiontext->questiontext);
         echo "The current question is -> ".strip_tags($questiontext->questiontext);
         return(1);
     } else {
diff --git a/ipal/show_question.php b/ipal/show_question.php
deleted file mode 100644
index 78e48d6..0000000
--- a/ipal/show_question.php
+++ /dev/null
@@ -1,110 +0,0 @@
-<?php
-// This file is part of Moodle - http://moodle.org/
-//
-// Moodle is free software: you can redistribute it and/or modify
-// it under the terms of the GNU General Public License as published by
-// the Free Software Foundation, either version 3 of the License, or
-// (at your option) any later version.
-//
-// Moodle is distributed in the hope that it will be useful,
-// but WITHOUT ANY WARRANTY; without even the implied warranty of
-// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-// GNU General Public License for more details.
-//
-// You should have received a copy of the GNU General Public License
-// along with Moodle.  If not, see <http://www.gnu.org/licenses/>.
-
-/**
- *
- * Use this file to display the selected question in an IPAL instance.
- *
- * @package    mod_ipal
- * @copyright  2013 Bill Junkin
- * @license    http://www.gnu.org/copyleft/gpl.html GNU GPL v3 or later
- */
-?>
- 
-<html>
-<head>
-</head>
-<body>
-<?php
-require_once('../../config.php');
-require_once("lib.php");
-require_once('../../lib/filelib.php');
-
-/**
- * Function to get possible answers to a given question
- *
- * @param int $questionid The id of the question.
- * @return array An array of the possible responses with the answer Id as the key
- */
-function ipal_get_answers($questionid) {
-    global $DB;
-    $answerarray = array();
-    $answers = $DB->get_records('question_answers', array('question' => $questionid));
-    foreach ($answers as $answers) {
-            $answerarray[$answers->id] = $answers->answer;
-    }
-
-    return($answerarray);
-}
-
-
-/**
- * Function to get the question text and answers for specific question.
- *
- * @param int $qid The id of the question.
- * @return array An array of the question id, text, and possible responses
- */
-function ipal_get_questions($qid) {
-    global $DB;
-    $pagearray2 = array();
-
-    $aquestions = $DB->get_record('question', array('id' => $qid));
-    if ($aquestions->questiontext != "") {
-
-        $pagearray2[] = array('id' => $qid, 'question' => $aquestions->questiontext, 'answers' => ipal_get_answers($qid));
-
-    }
-    return($pagearray2);
-}
-
-/**
- * Function to display a question 
- *
- */
-function ipal_display_standalone_question() {
-    global $contextid;
-    global $entryid;
-    $qid = $_GET['qid'];
-    $myformarray = ipal_get_questions($qid);
-    echo "<form action=\"\">\n";
-    $text = $myformarray[0]['question'];
-    $text = file_rewrite_pluginfile_urls($text, 'pluginfile.php', $contextid->id, 'question', 'questiontext/'.$entryid.'/1', $qid);
-    echo  $text;
-    echo "<br>";
-    foreach ($myformarray[0]['answers'] as $k => $v) {
-        echo "<input type=\"radio\" name=\"answer_id\" value=\"$k\"/> ".strip_tags($v)."<br />\n";
-    }
-    echo "</form>";
-}
-
-// Add entry to the question_usages table so that pluginfile.php will work.
-$id = $_GET['id'];
-
-$ipal = $DB->get_record('ipal', array('id' => $_GET['id']));
-$courseid = $ipal->course;
-$contextid = $DB->get_record('context', array('instanceid' => $courseid, 'contextlevel' => 50));
-    $record = new Stdclass();
-    $record->contextid = $contextid->id;
-    $record->component = 'mod_ipal';
-    $record->preferredbehaviour = 'deferredfeedback';
-    $lastinsertid = $DB->insert_record('question_usages', $record);
-    $entryid = $lastinsertid;
-
-ipal_display_standalone_question();
-
-?>
-</body>
-</html>
diff --git a/ipal/version.php b/ipal/version.php
index bfa420b..bf8966c 100644
--- a/ipal/version.php
+++ b/ipal/version.php
@@ -28,7 +28,7 @@
 
 defined('MOODLE_INTERNAL') || die();
 
-$module->version  = 2014100100;  // The current module version (Date: YYYYMMDDXX).
-$module->requires = 2011033003;  // Requires this Moodle version.
+$module->version  = 2014101300;  // The current module version (Date: YYYYMMDDXX).
+$module->requires = 2014051200;  // Requires this Moodle version.
 $module->cron     = 60;           // Period for cron to check this module (secs).
-$module->release = '2.0.0 (Build: 2014100100';
\ No newline at end of file
+$module->release = '2.0.1 (Build: 2014101300';
\ No newline at end of file