.ruff.toml

lint.ignore = [
   'E701', #  [ ] Multiple statements on one line (colon)
]
lint.dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?)|ic)$"
line-length = 111
target-version = "py39"
format.quote-style = "single"
format.indent-style = "space"
format.docstring-code-format = true


exclude = [
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".git-rewrite",
    ".hg",
    ".ipynb_checkpoints",
    ".mypy_cache",
    ".nox",
    ".pants.d",
    ".pyenv",
    ".pytest_cache",
    ".pytype",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    ".vscode",
    "__pypackages__",
    "_build",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "site-packages",
    "venv",
   "images",
   "lib",
   "openfold",
   "pymol_config",
   "README.md",
   "rf2aa",
   "fused_mpnn",
   "se3_flow_matching",
]