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DESCRIPTION
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Package: microbiomeDASim
Type: Package
Title: Microbiome Differential Abundance Simulation
Version: 1.3.0
Author: Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson
Maintainer: Justin Williams <[email protected]>
Description: A toolkit for simulating differential microbiome data designed for
longitudinal analyses. Several functional forms may be specified for the
mean trend. Observations are drawn from a multivariate normal model. The objective of this
package is to be able to simulate data in order to accurately compare different longitudinal
methods for differential abundance.
License: MIT + file LICENSE
Imports:
graphics,
ggplot2,
MASS,
tmvtnorm,
Matrix,
mvtnorm,
pbapply,
stats,
phyloseq,
metagenomeSeq,
Biobase
Depends:
R (>= 3.6.0)
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.0.2
Suggests:
testthat (>= 2.1.0),
knitr,
devtools
VignetteBuilder: knitr
biocViews: Microbiome,
Visualization,
Software
BugReports: https://github.com/williazo/microbiomeDASim/issues
URL: https://github.com/williazo/microbiomeDASim