From 8a3d88e286fe165498fd949f1db4c0295caef245 Mon Sep 17 00:00:00 2001
From: Michael Tao <michael.tao@cims.nyu.edu>
Date: Mon, 25 Nov 2024 13:56:15 -0500
Subject: [PATCH] adding get_integration_test stuff

---
 .../isotropic_remeshing/examples/raw/camel.json    |  3 ++-
 applications/isotropic_remeshing/main.cpp          | 14 +++++++++++++-
 .../src/wmtk/applications/utils/CMakeLists.txt     |  3 +++
 .../utils/get_integration_test_data_root.cpp       | 14 ++++++++++++++
 .../utils/get_integration_test_data_root.hpp       |  6 ++++++
 5 files changed, 38 insertions(+), 2 deletions(-)
 create mode 100644 applications/utils/src/wmtk/applications/utils/get_integration_test_data_root.cpp
 create mode 100644 applications/utils/src/wmtk/applications/utils/get_integration_test_data_root.hpp

diff --git a/applications/isotropic_remeshing/examples/raw/camel.json b/applications/isotropic_remeshing/examples/raw/camel.json
index 2000341658..9f90edb653 100644
--- a/applications/isotropic_remeshing/examples/raw/camel.json
+++ b/applications/isotropic_remeshing/examples/raw/camel.json
@@ -1,6 +1,6 @@
 {
     "input": {
-        "file": "unit_test/meshes/camel.msh"
+        "file": "unit_test/meshes/camel.msh",
         "name_spec": {"pos": "uv"}
     },
     "root": "/home/mtao/git/wildmeshing-toolkit/data/aa0abd4658bb064515ee7cc2a7be87aa",
@@ -9,6 +9,7 @@
         "length_rel": 1,
         "length_abs": -1,
         "lock_boundary": true,
+        "edge_swap_mode": "valence",
         "use_for_periodic": false,
         "dont_disable_split": false,
         "fix_uv_seam": false,
diff --git a/applications/isotropic_remeshing/main.cpp b/applications/isotropic_remeshing/main.cpp
index 92a8206d8c..6e7925a472 100644
--- a/applications/isotropic_remeshing/main.cpp
+++ b/applications/isotropic_remeshing/main.cpp
@@ -4,11 +4,12 @@
 #include <filesystem>
 #include <nlohmann/json.hpp>
 #include <wmtk/applications/utils/element_count_report.hpp>
+#include <wmtk/applications/utils/get_integration_test_data_root.hpp>
 #include <wmtk/applications/utils/parse_jse.hpp>
 #include <wmtk/components/input/InputOptions.hpp>
 #include <wmtk/components/multimesh/MeshCollection.hpp>
-#include <wmtk/components/multimesh/utils/get_attribute.hpp>
 #include <wmtk/components/multimesh/utils/AttributeDescription.hpp>
+#include <wmtk/components/multimesh/utils/get_attribute.hpp>
 #include "wmtk/components/utils/PathResolver.hpp"
 
 #include <wmtk/Mesh.hpp>
@@ -35,9 +36,15 @@ int main(int argc, char* argv[])
     app.ignore_case();
 
     fs::path json_input_file;
+    fs::path json_integration_config_file;
     app.add_option("-j, --json", json_input_file, "json specification file")
         ->required(true)
         ->check(CLI::ExistingFile);
+    app.add_option(
+           "-i, --integration-test-config",
+           json_integration_config_file,
+           "Test config file for integration test")
+        ->check(CLI::ExistingFile);
     CLI11_PARSE(app, argc, argv);
 
     // nlohmann::json j = wmtk::applications::utils::parse_jse(
@@ -54,6 +61,11 @@ int main(int argc, char* argv[])
     if (j.contains("root")) {
         path_resolver = j["root"];
     }
+    if (!json_integration_config_file.empty()) {
+        auto path = wmtk::applications::utils::get_integration_test_data_root(
+            json_integration_config_file,
+            argv[0]);
+    }
 
 
     auto input_opts = input_js.get<wmtk::components::input::InputOptions>();
diff --git a/applications/utils/src/wmtk/applications/utils/CMakeLists.txt b/applications/utils/src/wmtk/applications/utils/CMakeLists.txt
index 1a3d4887e2..cddae8d691 100644
--- a/applications/utils/src/wmtk/applications/utils/CMakeLists.txt
+++ b/applications/utils/src/wmtk/applications/utils/CMakeLists.txt
@@ -5,4 +5,7 @@ target_sources(wmtk_application_utils PRIVATE
     parse_jse.hpp
     parse_jse.cpp
 
+    get_integration_test_data_root.hpp
+    get_integration_test_data_root.cpp
+
 )
diff --git a/applications/utils/src/wmtk/applications/utils/get_integration_test_data_root.cpp b/applications/utils/src/wmtk/applications/utils/get_integration_test_data_root.cpp
new file mode 100644
index 0000000000..5e40edd77e
--- /dev/null
+++ b/applications/utils/src/wmtk/applications/utils/get_integration_test_data_root.cpp
@@ -0,0 +1,14 @@
+#include <filesystem>
+#include <fstream>
+#include <nlohmann/json.hpp>
+
+namespace wmtk::applications::utils {
+    std::filesystem::path get_integration_test_data_root(const std::filesystem::path& js_path, const std::filesystem::path& app_path) {
+        std::ifstream ifs(js_path);
+        nlohmann::json js;
+        ifs >> js;
+        return js[app_path.filename()]["data_folder"];
+
+
+    }
+}
diff --git a/applications/utils/src/wmtk/applications/utils/get_integration_test_data_root.hpp b/applications/utils/src/wmtk/applications/utils/get_integration_test_data_root.hpp
new file mode 100644
index 0000000000..5165576e1d
--- /dev/null
+++ b/applications/utils/src/wmtk/applications/utils/get_integration_test_data_root.hpp
@@ -0,0 +1,6 @@
+#pragma once
+#include <filesystem>
+
+namespace wmtk::applications::utils {
+    std::filesystem::path get_integration_test_data_root(const std::filesystem::path& js_path, const std::filesystem::path& app_path) ;
+}