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Possible missing PMIDs in WP0-refs.tsv #2

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larsgw opened this issue Jan 15, 2022 · 2 comments
Open

Possible missing PMIDs in WP0-refs.tsv #2

larsgw opened this issue Jan 15, 2022 · 2 comments
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@mkutmon @hbasaric
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@larsgw
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larsgw commented Jan 15, 2022

For e.g. WP1244 I see three references on the page, but there are no references in WP1244-refs.tsv.
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mkutmon commented Mar 2, 2022 •
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hmmm I need to look more into those because the publication references are not referenced anywhere in that particular pathway. So they shouldn't be present. That links to a former bug in the reference manager. I assume that's why they do not get extracted when I create the -refs.tsv file.

@AlexanderPico AlexanderPico added the bug Something isn't working label Jan 25, 2023
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Confirmed. This is still an issue. It occurred again with WP5303. My "hack" was to simply add a BiopaxRef manually and then it was processed correctly.

How do references get added without being assigned to a pathway element? Is that something PathVisio should enforce?

I guess it could also be a GPML validation check?

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