From a115c12ac86d52bcedc151ad1367bf5bae885757 Mon Sep 17 00:00:00 2001 From: AlexanderPico Date: Sun, 15 Sep 2024 01:49:56 +0000 Subject: [PATCH] new content from pmc --- downstream/citedin_lookup.yml | 408 +++++++++++++++++----------------- 1 file changed, 209 insertions(+), 199 deletions(-) diff --git a/downstream/citedin_lookup.yml b/downstream/citedin_lookup.yml index abc825cb9..adaaef225 100644 --- a/downstream/citedin_lookup.yml +++ b/downstream/citedin_lookup.yml @@ -1,5 +1,5 @@ --- -last_run: 2024/09/08 +last_run: 2024/09/15 WP1: - link: PMC5075206 title: Hepatic transcriptome implications for palm fruit juice deterrence of type @@ -285,8 +285,8 @@ WP127: gene expression in blood (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP1270: - link: PMC5075206 title: Hepatic transcriptome implications for palm fruit juice deterrence of type @@ -575,8 +575,8 @@ WP1449: Revealed Contribution of Interferon Signaling to Severity of COVID-19 (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP145: - link: PMC7811506 title: Organophosphorus flame retardants are developmental neurotoxicants in a rat @@ -764,7 +764,7 @@ WP1589: WP1591: - link: 10.1016/j.tiv.2016.03.009 title: MicroRNAs as potential biomarkers for doxorubicin-induced cardiotoxicity -- link: 10.1186/s13148-023-01612-8 +- link: 10.1186/s13148-023-01612-8 title: 'Methylation analysis by targeted bisulfite sequencing in large for gestational age (LGA) newborns: the LARGAN cohort (2024)' WP160: @@ -1023,8 +1023,8 @@ WP1983: WP1984: - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP1992: - link: 10.1016/j.compbiomed.2014.12.003 title: Integrative epigenetic profiling analysis identifies DNA methylation changes @@ -1078,8 +1078,8 @@ WP2018: title: MicroRNAs as potential biomarkers for doxorubicin-induced cardiotoxicity - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP2023: - link: PMC5085087 title: Long Term Culture of the A549 Cancer Cell Line Promotes Multilamellar Body @@ -1102,8 +1102,8 @@ WP2034: title: MicroRNAs as potential biomarkers for doxorubicin-induced cardiotoxicity - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP2036: - link: PMC8431385 title: Investigating the Molecular Processes behind the Cell-Specific Toxicity Response @@ -1117,8 +1117,8 @@ WP2036: patients (2022)' - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP2037: - link: PMC3421022 title: A pathway map of prolactin signaling (2012) @@ -1129,8 +1129,8 @@ WP2037: title: MicroRNAs as potential biomarkers for doxorubicin-induced cardiotoxicity - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP2038: - link: PMC7470419 title: A novel single-cell based method for breast cancer prognosis (2020) @@ -1351,8 +1351,8 @@ WP231: title: MicroRNAs as potential biomarkers for doxorubicin-induced cardiotoxicity - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP2310: - link: 10.1038/mtm.2014.7 title: Proteomic profiling of salivary gland after nonviral gene transfer mediated @@ -1397,8 +1397,8 @@ WP2324: through pyroptosis (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP2328: - link: PMC9312476 title: Immunomodulation of Pluripotent Stem Cell-Derived Mesenchymal Stem Cells @@ -1505,8 +1505,8 @@ WP2361: title: 24h-gene variation effect of combined bevacizumab/erlotinib in advanced non-squamous non-small cell lung cancer using exon array blood profiling (2017) - link: 10.1097/md.0000000000039057 - title: Investigation of the relationship between COVID-19 and pancreatic cancer using - bioinformatics and systems biology approaches (2024) + title: Investigation of the relationship between COVID-19 and pancreatic cancer + using bioinformatics and systems biology approaches (2024) WP2363: - link: PMC7470419 title: A novel single-cell based method for breast cancer prognosis (2020) @@ -1543,8 +1543,8 @@ WP2374: pathological conditions (2023) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP2376: - link: PMC7645421 title: Unraveling the blood transcriptome after real-life exposure of Wistar-rats @@ -1559,8 +1559,8 @@ WP2380: title: Copy number variant risk loci for schizophrenia converge on the BDNF pathway - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP24: - link: PMC9440113 title: Machine learning and bioinformatics to identify 8 autophagy-related biomarkers @@ -1582,8 +1582,9 @@ WP240: by conventional plasmids and minicircles (2014) WP2406: - link: 10.1038/s41416-023-02140-1 - title: Transcriptome analysis of newly established carboplatin-resistant ovarian cancer - cell model reveals genes shared by drug resistance and drug-induced EMT (2023) + title: Transcriptome analysis of newly established carboplatin-resistant ovarian + cancer cell model reveals genes shared by drug resistance and drug-induced EMT + (2023) WP241: - link: PMC4127987 title: Polymorphisms in genes related to one-carbon metabolism are not related to @@ -1656,8 +1657,8 @@ WP2446: title: 'Identification of the effects of COVID-19 on patients with pulmonary fibrosis and lung cancer: a bioinformatics analysis and literature review (2022)' - link: 10.1097/md.0000000000039057 - title: Investigation of the relationship between COVID-19 and pancreatic cancer using - bioinformatics and systems biology approaches (2024) + title: Investigation of the relationship between COVID-19 and pancreatic cancer + using bioinformatics and systems biology approaches (2024) WP2447: - link: PMC8170991 title: 'NoRCE: non-coding RNA sets cis enrichment tool (2021)' @@ -1692,9 +1693,9 @@ WP2507: title: Construction and analysis of protein-protein interaction network of non-alcoholic fatty liver disease - link: 10.1016/j.bbih.2023.100646 - title: 'Autistic spectrum disorder (ASD) - Gene, molecular and pathway signatures + title: Autistic spectrum disorder (ASD) - Gene, molecular and pathway signatures linking systemic inflammation, mitochondrial dysfunction, transsynaptic signalling, - and neurodevelopmen (2023)' + and neurodevelopmen (2023) WP2509: - link: PMC8466482 title: The Link between Type 2 Diabetes Mellitus and the Polymorphisms of Glutathione-Metabolizing @@ -1736,8 +1737,8 @@ WP2526: Phase 3 (2020) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP2533: - link: PMC9015122 title: Understanding signaling and metabolic paths using semantified and harmonized @@ -1799,8 +1800,8 @@ WP254: fatty liver disease - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' - link: 10.1016/j.stemcr.2023.05.007 title: Parallel use of human stem cell lung and heart models provide insights for SARS-CoV-2 treatment (2023) @@ -1850,8 +1851,8 @@ WP26: associated with chronic alcohol consumption (2015) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP260: - link: PMC5753270 title: 'WikiPathways: a multifaceted pathway database bridging metabolomics to other @@ -1998,11 +1999,12 @@ WP2857: identify potential cancer-driving miRNAs in a broad range of head and neck squamous cell carcinoma subtypes (2018) - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' - link: 10.1038/s41416-023-02140-1 - title: Transcriptome analysis of newly established carboplatin-resistant ovarian cancer - cell model reveals genes shared by drug resistance and drug-induced EMT (2023) + title: Transcriptome analysis of newly established carboplatin-resistant ovarian + cancer cell model reveals genes shared by drug resistance and drug-induced EMT + (2023) WP2858: - link: PMC9222608 title: Fish as Model Systems to Study Epigenetic Drivers in Human Self-Domestication @@ -2013,8 +2015,9 @@ WP2858: - link: PMC6117012 title: A proteomic signature that reflects pancreatic beta-cell function (2018) - link: 10.1038/s41416-023-02140-1 - title: Transcriptome analysis of newly established carboplatin-resistant ovarian cancer - cell model reveals genes shared by drug resistance and drug-induced EMT (2023) + title: Transcriptome analysis of newly established carboplatin-resistant ovarian + cancer cell model reveals genes shared by drug resistance and drug-induced EMT + (2023) WP286: - link: PMC8751594 title: DNA methylation of ARHGAP30 is negatively associated with ARHGAP30 expression @@ -2038,8 +2041,8 @@ WP286: title: MicroRNAs as potential biomarkers for doxorubicin-induced cardiotoxicity - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP2864: - link: PMC7339012 title: Hematopoietic stem-cell senescence and myocardial repair - Coronary artery @@ -2145,8 +2148,9 @@ WP2880: title: Systems biology approach reveals a common molecular basis for COVID-19 and non-alcoholic fatty liver disease (NAFLD) (2022) - link: 10.1038/s41416-023-02140-1 - title: Transcriptome analysis of newly established carboplatin-resistant ovarian cancer - cell model reveals genes shared by drug resistance and drug-induced EMT (2023) + title: Transcriptome analysis of newly established carboplatin-resistant ovarian + cancer cell model reveals genes shared by drug resistance and drug-induced EMT + (2023) WP2881: - link: PMC8267496 title: Transcriptomic Profiling of Collagenous Colitis Identifies Hallmarks of Nondestructive @@ -2186,11 +2190,12 @@ WP2882: disease 2019 on patients with allergic asthma (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' - link: 10.1038/s41416-023-02140-1 - title: Transcriptome analysis of newly established carboplatin-resistant ovarian cancer - cell model reveals genes shared by drug resistance and drug-induced EMT (2023) + title: Transcriptome analysis of newly established carboplatin-resistant ovarian + cancer cell model reveals genes shared by drug resistance and drug-induced EMT + (2023) WP2884: - link: PMC9440516 title: Early transcriptional responses of bronchial epithelial cells to whole cigarette @@ -2407,8 +2412,8 @@ WP306: D (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP307: - link: PMC8856713 title: A Shared Transcriptional Identity for Forebrain and Dentate Gyrus Neural @@ -2493,8 +2498,8 @@ WP3286: pathological conditions (2023) WP3297: - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' - link: 10.1038/s41598-023-33585-2 title: Bioinformatics analysis of the pathogenic link between Epstein-Barr virus infection, systemic lupus erythematosus and diffuse large B cell lymphoma (2023) @@ -2508,7 +2513,7 @@ WP3298: - link: 10.1159/000535120 title: Human Monocytes Exposed to SARS-CoV-2 Display Features of Innate Immune Memory Producing High Levels of CXCL10 upon Restimulation (2023) -- link: 10.1186/s13148-023-01612-8 +- link: 10.1186/s13148-023-01612-8 title: 'Methylation analysis by targeted bisulfite sequencing in large for gestational age (LGA) newborns: the LARGAN cohort (2024)' WP3299: @@ -2538,8 +2543,8 @@ WP3303: D (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP334: - link: PMC8083324 title: Bioinformatics and system biology approach to identify the influences of @@ -2720,8 +2725,8 @@ WP3611: non-alcoholic fatty liver disease (NAFLD) (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP3614: - link: PMC7929374 title: Identification of biomarkers and pathways for the SARS-CoV-2 infections that @@ -2754,8 +2759,8 @@ WP3617: for diagnosis and therapies of SARS-CoV-2 infections (2023) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP3624: - link: PMC9377275 title: 'Identifying Drug-Induced Liver Injury Associated With Inflammation-Drug @@ -2800,8 +2805,9 @@ WP3624: title: A Data Fusion Pipeline for Generating and Enriching Adverse Outcome Pathway Descriptions - link: 10.1038/s41416-023-02140-1 - title: Transcriptome analysis of newly established carboplatin-resistant ovarian cancer - cell model reveals genes shared by drug resistance and drug-induced EMT (2023) + title: Transcriptome analysis of newly established carboplatin-resistant ovarian + cancer cell model reveals genes shared by drug resistance and drug-induced EMT + (2023) WP3625: - link: PMC6317891 title: Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration @@ -3029,8 +3035,8 @@ WP382: - link: 10.1016/j.tiv.2016.03.009 title: MicroRNAs as potential biomarkers for doxorubicin-induced cardiotoxicity - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' - link: 10.3390/ijms25115731 title: Longitudinal Neuropathological Consequences of Extracranial Radiation Therapy in Mice (2024) @@ -3103,8 +3109,8 @@ WP3865: title: Construction and analysis of protein-protein interaction network of non-alcoholic fatty liver disease - link: 10.3390/pathogens12111373 - title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals - Immune-Related Signaling Pathways (2024) + title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals Immune-Related + Signaling Pathways (2024) WP387: - link: PMC7339012 title: Hematopoietic stem-cell senescence and myocardial repair - Coronary artery @@ -3123,9 +3129,9 @@ WP3872: analysis (2020) WP3874: - link: 10.7554/eLife.91729.3 - title: "Single-cell ‘omic profiles of human aortic endothelial cells in vitro and human - atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and - response to activating perturbations (2024)" + title: Single-cell ‘omic profiles of human aortic endothelial cells in vitro and + human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype + and response to activating perturbations (2024) WP3877: - link: PMC9537444 title: Bioinformatics and systems-biology analysis to determine the effects of Coronavirus @@ -3184,8 +3190,8 @@ WP3888: in cancer cells reveals interference with key cellular pathways (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP3890: - link: PMC9154116 title: Target and drug predictions for SARS-CoV-2 infection in hepatocellular carcinoma @@ -3279,8 +3285,8 @@ WP3931: title: Shared mechanisms and crosstalk of COVID-19 and osteoporosis via vitamin D (2022) - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' WP3932: - link: PMC8278688 title: Complete response to neoadjuvant chemoradiotherapy in rectal cancer is associated @@ -3292,8 +3298,8 @@ WP3932: title: Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis (2018) - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' WP3934: - link: PMC9440113 title: Machine learning and bioinformatics to identify 8 autophagy-related biomarkers @@ -3399,9 +3405,9 @@ WP3959: - link: PMC6961668 title: The double dealing of cyclin D1 (2020) - link: 10.1016/j.bbih.2023.100646 - title: 'Autistic spectrum disorder (ASD) - Gene, molecular and pathway signatures + title: Autistic spectrum disorder (ASD) - Gene, molecular and pathway signatures linking systemic inflammation, mitochondrial dysfunction, transsynaptic signalling, - and neurodevelopmen (2023)' + and neurodevelopmen (2023) WP3963: - link: PMC9630378 title: MicroRNA-874 targets phosphomevalonate kinase and inhibits cancer cell growth @@ -3457,8 +3463,8 @@ WP3998: title: 'Discovering Common Pathogenic Mechanisms of COVID-19 and Parkinson Disease: An Integrated Bioinformatics Analysis (2022)' - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' WP40: - link: PMC3650681 title: Microarray analyses reveal novel targets of exercise-induced stress resistance @@ -3670,8 +3676,8 @@ WP4149: of Putative Mechanisms by Which Lipid-Associated GWAS Loci Contribute to Coronary Artery Disease (2022) - link: 10.3390/pathogens12111373 - title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals - Immune-Related Signaling Pathways (2024) + title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals Immune-Related + Signaling Pathways (2024) - link: 10.1038/s41598-023-33585-2 title: Bioinformatics analysis of the pathogenic link between Epstein-Barr virus infection, systemic lupus erythematosus and diffuse large B cell lymphoma (2023) @@ -3679,8 +3685,8 @@ WP4150: - link: PMC9729821 title: Gene set predictor for post-treatment Lyme disease (2022) - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' WP4155: - link: PMC8431385 title: Investigating the Molecular Processes behind the Cell-Specific Toxicity Response @@ -3708,19 +3714,20 @@ WP4172: title: A patient-based iPSC-derived hepatocyte model of alcohol-associated cirrhosis reveals bioenergetic insights into disease pathogenesis (2024) - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' - link: 10.1038/s41416-023-02140-1 - title: Transcriptome analysis of newly established carboplatin-resistant ovarian cancer - cell model reveals genes shared by drug resistance and drug-induced EMT (2023) + title: Transcriptome analysis of newly established carboplatin-resistant ovarian + cancer cell model reveals genes shared by drug resistance and drug-induced EMT + (2023) - link: 10.1016/j.bbih.2023.100646 - title: 'Autistic spectrum disorder (ASD) - Gene, molecular and pathway signatures + title: Autistic spectrum disorder (ASD) - Gene, molecular and pathway signatures linking systemic inflammation, mitochondrial dysfunction, transsynaptic signalling, - and neurodevelopmen (2023)' + and neurodevelopmen (2023) WP4186: - link: PMC9421182 title: Survival estimation in patients with stomach and esophageal carcinoma using @@ -3758,8 +3765,8 @@ WP4197: title: Statistical and network analyses reveal mechanisms for the enhancement of macrophage immunity by manganese in Mycobacterium tuberculosis infection (2024) - link: 10.3390/pathogens12111373 - title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals - Immune-Related Signaling Pathways (2024) + title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals Immune-Related + Signaling Pathways (2024) WP4210: - link: PMC8937610 title: Bioinformatics analysis of potential therapeutic targets for COVID-19 infection @@ -3776,8 +3783,8 @@ WP4211: reveals the susceptibility of severe patients to other comorbidities and non-viral pathological conditions (2023) - link: 10.3390/pathogens12111373 - title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals - Immune-Related Signaling Pathways (2024) + title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals Immune-Related + Signaling Pathways (2024) - link: 10.1038/s41598-024-70629-7 title: The differential expression of adipose tissue genes in short, medium and long-term periods after bariatric surgery (2024) @@ -3794,8 +3801,8 @@ WP4217: fatty liver disease - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP422: - link: PMC6834541 title: Altered Levels of Proteins and Phosphoproteins, in the Absence of Early Causative @@ -3846,7 +3853,7 @@ WP4255: title: Shared mechanisms and crosstalk of COVID-19 and osteoporosis via vitamin D (2022) WP4258: -- link: 10.1186/s13148-023-01612-8 +- link: 10.1186/s13148-023-01612-8 title: 'Methylation analysis by targeted bisulfite sequencing in large for gestational age (LGA) newborns: the LARGAN cohort (2024)' WP4262: @@ -3859,9 +3866,9 @@ WP4262: title: Shared mechanisms and crosstalk of COVID-19 and osteoporosis via vitamin D (2022) - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' -- link: 10.1186/s13148-023-01612-8 + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' +- link: 10.1186/s13148-023-01612-8 title: 'Methylation analysis by targeted bisulfite sequencing in large for gestational age (LGA) newborns: the LARGAN cohort (2024)' WP4263: @@ -3870,8 +3877,8 @@ WP4263: D (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP4269: - link: PMC9154116 title: Target and drug predictions for SARS-CoV-2 infection in hepatocellular carcinoma @@ -3907,8 +3914,8 @@ WP4290: - link: PMC6961668 title: The double dealing of cyclin D1 (2020) - link: 10.1097/md.0000000000039057 - title: Investigation of the relationship between COVID-19 and pancreatic cancer using - bioinformatics and systems biology approaches (2024) + title: Investigation of the relationship between COVID-19 and pancreatic cancer + using bioinformatics and systems biology approaches (2024) WP4297: - link: PMC7982796 title: 'ACE2 correlates with immune infiltrates in colon adenocarcinoma: Implication @@ -4031,7 +4038,7 @@ WP4331: title: Cellular and Molecular Heterogeneity Associated with Vessel Formation Processes (2018) WP4336: -- link: 10.1186/s13148-023-01612-8 +- link: 10.1186/s13148-023-01612-8 title: 'Methylation analysis by targeted bisulfite sequencing in large for gestational age (LGA) newborns: the LARGAN cohort (2024)' WP434: @@ -4059,9 +4066,9 @@ WP4341: title: Combination of Enrichment Using Gene Ontology and Transcriptomic Analysis Revealed Contribution of Interferon Signaling to Severity of COVID-19 (2022) - link: 10.7554/eLife.91729.3 - title: "Single-cell ‘omic profiles of human aortic endothelial cells in vitro and human - atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and - response to activating perturbations (2024)" + title: Single-cell ‘omic profiles of human aortic endothelial cells in vitro and + human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype + and response to activating perturbations (2024) WP4346: - link: PMC8760256 title: A mutation in transmembrane protein 135 impairs lipid metabolism in mouse @@ -4151,8 +4158,8 @@ WP4396: title: Target Deconvolution of Fenofibrate in Nonalcoholic Fatty Liver Disease Using Bioinformatics Analysis (2021) - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' WP44: - link: PMC9419366 title: Identification of hub genes in the subacute spinal cord injury in rats (2022) @@ -4493,12 +4500,12 @@ WP4629: title: The Mixture of Ferulic Acid and P-Coumaric Acid Suppresses Colorectal Cancer through lncRNA 495810/PKM2 Mediated Aerobic Glycolysis (2022) - link: 10.7554/eLife.91729.3 - title: "Single-cell ‘omic profiles of human aortic endothelial cells in vitro and human - atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and - response to activating perturbations (2024)" + title: Single-cell ‘omic profiles of human aortic endothelial cells in vitro and + human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype + and response to activating perturbations (2024) - link: 10.1097/md.0000000000039057 - title: Investigation of the relationship between COVID-19 and pancreatic cancer using - bioinformatics and systems biology approaches (2024) + title: Investigation of the relationship between COVID-19 and pancreatic cancer + using bioinformatics and systems biology approaches (2024) WP465: - link: PMC7329820 title: Citalopram-induced pathways regulation and tentative treatment-outcome-predicting @@ -4531,8 +4538,8 @@ WP4659: worldwide and pharmacogenomics strategies based on precision oncology (2024) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP466: - link: PMC8751594 title: DNA methylation of ARHGAP30 is negatively associated with ARHGAP30 expression @@ -4664,8 +4671,8 @@ WP4747: Study (2022)' - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP4752: - link: PMC8751594 title: DNA methylation of ARHGAP30 is negatively associated with ARHGAP30 expression @@ -4702,12 +4709,12 @@ WP4754: reveals the susceptibility of severe patients to other comorbidities and non-viral pathological conditions (2023) - link: 10.3390/pathogens12111373 - title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals - Immune-Related Signaling Pathways (2024) + title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals Immune-Related + Signaling Pathways (2024) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP4760: - link: PMC8375987 title: Ten simple rules for creating reusable pathway models for computational analysis @@ -4740,15 +4747,15 @@ WP477: title: Comparative proteomics analysis of decidua reveals altered RNA processing and impaired ribosome function in recurrent pregnancy loss (2024) - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' - link: 10.7554/eLife.91729.3 - title: "Single-cell ‘omic profiles of human aortic endothelial cells in vitro and human - atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and - response to activating perturbations (2024)" + title: Single-cell ‘omic profiles of human aortic endothelial cells in vitro and + human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype + and response to activating perturbations (2024) - link: 10.3390/pathogens12111373 - title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals - Immune-Related Signaling Pathways (2024) + title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals Immune-Related + Signaling Pathways (2024) WP478: - link: PMC5708175 title: Metabolomic effects of CeO2, SiO2 and CuO metal oxide nanomaterials on HepG2 @@ -4758,12 +4765,13 @@ WP4786: title: Blood biomarkers representing maternal-fetal interface tissues used to predict early-and late-onset preeclampsia but not COVID-19 infection (2022) - link: 10.1038/s41416-023-02140-1 - title: Transcriptome analysis of newly established carboplatin-resistant ovarian cancer - cell model reveals genes shared by drug resistance and drug-induced EMT (2023) + title: Transcriptome analysis of newly established carboplatin-resistant ovarian + cancer cell model reveals genes shared by drug resistance and drug-induced EMT + (2023) WP4787: - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' WP4790: - link: PMC9537444 title: Bioinformatics and systems-biology analysis to determine the effects of Coronavirus @@ -4782,8 +4790,8 @@ WP4806: D (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP4808: - link: PMC9222608 title: Fish as Model Systems to Study Epigenetic Drivers in Human Self-Domestication @@ -4808,7 +4816,7 @@ WP481: title: Longitudinal Neuropathological Consequences of Extracranial Radiation Therapy in Mice (2024) WP4814: -- link: 10.1186/s13148-023-01612-8 +- link: 10.1186/s13148-023-01612-8 title: 'Methylation analysis by targeted bisulfite sequencing in large for gestational age (LGA) newborns: the LARGAN cohort (2024)' WP4815: @@ -4828,12 +4836,13 @@ WP4830: title: Overlap of vitamin A and vitamin D target genes with CAKUT-related processes (2022) - link: 10.1038/s41416-023-02140-1 - title: Transcriptome analysis of newly established carboplatin-resistant ovarian cancer - cell model reveals genes shared by drug resistance and drug-induced EMT (2023) + title: Transcriptome analysis of newly established carboplatin-resistant ovarian + cancer cell model reveals genes shared by drug resistance and drug-induced EMT + (2023) WP4842: - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' WP4844: - link: PMC9440113 title: Machine learning and bioinformatics to identify 8 autophagy-related biomarkers @@ -4874,8 +4883,8 @@ WP4861: WP4864: - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP4868: - link: PMC9519890 title: 'Tissue-specific pathway activities: A retrospective analysis in COVID-19 @@ -4931,8 +4940,8 @@ WP4877: information about biological interactions (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP488: - link: PMC7518701 title: The DNA methylome of inflammatory bowel disease (IBD) reflects intrinsic @@ -4960,12 +4969,12 @@ WP4880: title: Longitudinal Neuropathological Consequences of Extracranial Radiation Therapy in Mice (2024) - link: 10.3390/pathogens12111373 - title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals - Immune-Related Signaling Pathways (2024) + title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals Immune-Related + Signaling Pathways (2024) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' - link: 10.1016/j.stemcr.2023.05.007 title: Parallel use of human stem cell lung and heart models provide insights for SARS-CoV-2 treatment (2023) @@ -4975,8 +4984,8 @@ WP4882: Producing High Levels of CXCL10 upon Restimulation (2023) WP4883: - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' WP4884: - link: PMC8427577 title: Extensive alternative splicing triggered by mitonuclear mismatch in naturally @@ -5008,9 +5017,9 @@ WP4891: title: Identification of host genomic biomarkers from multiple transcriptomics datasets for diagnosis and therapies of SARS-CoV-2 infections (2023) - link: 10.7554/eLife.91729.3 - title: "Single-cell ‘omic profiles of human aortic endothelial cells in vitro and human - atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and - response to activating perturbations (2024)" + title: Single-cell ‘omic profiles of human aortic endothelial cells in vitro and + human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype + and response to activating perturbations (2024) - link: 10.1016/j.bbrep.2023.101602 title: Statistical and network analyses reveal mechanisms for the enhancement of macrophage immunity by manganese in Mycobacterium tuberculosis infection (2024) @@ -5088,8 +5097,8 @@ WP4961: title: Identification of host genomic biomarkers from multiple transcriptomics datasets for diagnosis and therapies of SARS-CoV-2 infections (2023) - link: 10.3390/pathogens12111373 - title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals - Immune-Related Signaling Pathways (2024) + title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals Immune-Related + Signaling Pathways (2024) WP4962: - link: PMC9154116 title: Target and drug predictions for SARS-CoV-2 infection in hepatocellular carcinoma @@ -5139,8 +5148,8 @@ WP5027: patients (2022)' WP5038: - link: 10.3390/pathogens12111373 - title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals - Immune-Related Signaling Pathways (2024) + title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals Immune-Related + Signaling Pathways (2024) WP5039: - link: PMC9130749 title: 'The Biological Interaction of SARS-CoV-2 Infection and Osteoporosis: A Preliminary @@ -5177,12 +5186,13 @@ WP5053: - link: 10.3390/metabo14040226 title: A System Biology Approach Reveals New Targets for Human Thyroid Gland Toxicity in Embryos and Adult Individuals (2024) -- link: 10.1186/s13148-023-01612-8 +- link: 10.1186/s13148-023-01612-8 title: 'Methylation analysis by targeted bisulfite sequencing in large for gestational age (LGA) newborns: the LARGAN cohort (2024)' - link: 10.1038/s41416-023-02140-1 - title: Transcriptome analysis of newly established carboplatin-resistant ovarian cancer - cell model reveals genes shared by drug resistance and drug-induced EMT (2023) + title: Transcriptome analysis of newly established carboplatin-resistant ovarian + cancer cell model reveals genes shared by drug resistance and drug-induced EMT + (2023) WP5063: - link: PMC9138293 title: 'An NF-κB- and Therapy-Related Regulatory Network in Glioma: A Potential @@ -5208,9 +5218,9 @@ WP5087: title: A Community-Driven, Openly Accessible Molecular Pathway Integrating Knowledge on Malignant Pleural Mesothelioma (2022) - link: 10.1016/j.bbih.2023.100646 - title: 'Autistic spectrum disorder (ASD) - Gene, molecular and pathway signatures + title: Autistic spectrum disorder (ASD) - Gene, molecular and pathway signatures linking systemic inflammation, mitochondrial dysfunction, transsynaptic signalling, - and neurodevelopmen (2023)' + and neurodevelopmen (2023) WP5088: - link: PMC9377275 title: 'Identifying Drug-Induced Liver Injury Associated With Inflammation-Drug @@ -5253,8 +5263,8 @@ WP51: title: 'New Insight Into Mechanisms of Hepatic Encephalopathy: An Integrative Analysis Approach to Identify Molecular Markers and Therapeutic Targets' - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' WP510: - link: PMC5351557 title: Covariate-Adjusted Precision Matrix Estimation with an Application in Genetical @@ -5275,20 +5285,20 @@ WP5115: title: SARS-CoV-2 induces “cytokine storm” hyperinflammatory responses in RA patients through pyroptosis (2022) - link: 10.7554/eLife.91729.3 - title: "Single-cell ‘omic profiles of human aortic endothelial cells in vitro and human - atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and - response to activating perturbations (2024)" + title: Single-cell ‘omic profiles of human aortic endothelial cells in vitro and + human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype + and response to activating perturbations (2024) - link: 10.1097/md.0000000000039057 - title: Investigation of the relationship between COVID-19 and pancreatic cancer using - bioinformatics and systems biology approaches (2024) + title: Investigation of the relationship between COVID-19 and pancreatic cancer + using bioinformatics and systems biology approaches (2024) - link: 10.1016/j.bbih.2023.100646 - title: 'Autistic spectrum disorder (ASD) - Gene, molecular and pathway signatures + title: Autistic spectrum disorder (ASD) - Gene, molecular and pathway signatures linking systemic inflammation, mitochondrial dysfunction, transsynaptic signalling, - and neurodevelopmen (2023)' + and neurodevelopmen (2023) WP5117: - link: 10.1097/md.0000000000039057 - title: Investigation of the relationship between COVID-19 and pancreatic cancer using - bioinformatics and systems biology approaches (2024) + title: Investigation of the relationship between COVID-19 and pancreatic cancer + using bioinformatics and systems biology approaches (2024) WP5124: - link: PMC9317794 title: A Novel Based-Network Strategy to Identify Phytochemicals from Radix Salviae @@ -5437,12 +5447,12 @@ WP534: title: A patient-based iPSC-derived hepatocyte model of alcohol-associated cirrhosis reveals bioenergetic insights into disease pathogenesis (2024) - link: 10.1097/md.0000000000039057 - title: Investigation of the relationship between COVID-19 and pancreatic cancer using - bioinformatics and systems biology approaches (2024) + title: Investigation of the relationship between COVID-19 and pancreatic cancer + using bioinformatics and systems biology approaches (2024) WP5355: - link: 10.1097/md.0000000000039057 - title: Investigation of the relationship between COVID-19 and pancreatic cancer using - bioinformatics and systems biology approaches (2024) + title: Investigation of the relationship between COVID-19 and pancreatic cancer + using bioinformatics and systems biology approaches (2024) WP536: - link: 10.1016/j.compbiomed.2014.12.003 title: Integrative epigenetic profiling analysis identifies DNA methylation changes @@ -5453,8 +5463,8 @@ WP539: by conventional plasmids and minicircles (2014) WP5390: - link: 10.1097/md.0000000000039057 - title: Investigation of the relationship between COVID-19 and pancreatic cancer using - bioinformatics and systems biology approaches (2024) + title: Investigation of the relationship between COVID-19 and pancreatic cancer + using bioinformatics and systems biology approaches (2024) WP5426: - link: 10.1038/s41598-024-65094-1 title: A novel insight into neurological disorders through HDAC6 protein–protein @@ -5507,8 +5517,8 @@ WP554: - link: PMC4338111 title: 'PathVisio 3: An Extendable Pathway Analysis Toolbox (2015)' - link: 10.1186/s40001-024-01951-z - title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: a - systems biology approach (2024)' + title: 'Non-dialyzable uremic toxins and renal tubular cell damage in CKD patients: + a systems biology approach (2024)' WP558: - link: PMC9255380 title: Gene-mapping study of extremes of cerebral small vessel disease reveals TRIM47 @@ -5541,8 +5551,8 @@ WP558: title: 'Discovering Common Pathogenic Mechanisms of COVID-19 and Parkinson Disease: An Integrated Bioinformatics Analysis (2022)' - link: 10.1097/md.0000000000039057 - title: Investigation of the relationship between COVID-19 and pancreatic cancer using - bioinformatics and systems biology approaches (2024) + title: Investigation of the relationship between COVID-19 and pancreatic cancer + using bioinformatics and systems biology approaches (2024) WP560: - link: PMC8868589 title: Comprehensive Statistical and Bioinformatics Analysis in the Deciphering @@ -5720,8 +5730,8 @@ WP619: title: Statistical and network analyses reveal mechanisms for the enhancement of macrophage immunity by manganese in Mycobacterium tuberculosis infection (2024) - link: 10.3390/pathogens12111373 - title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals - Immune-Related Signaling Pathways (2024) + title: Transcriptional Profiling of SARS-CoV-2-Infected Calu-3 Cells Reveals Immune-Related + Signaling Pathways (2024) - link: 10.1016/j.stemcr.2023.05.007 title: Parallel use of human stem cell lung and heart models provide insights for SARS-CoV-2 treatment (2023) @@ -5816,8 +5826,8 @@ WP673: title: MicroRNAs as potential biomarkers for doxorubicin-induced cardiotoxicity - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP678: - link: 10.1038/s41598-023-33585-2 title: Bioinformatics analysis of the pathogenic link between Epstein-Barr virus @@ -5934,8 +5944,8 @@ WP710: title: MicroRNAs as potential biomarkers for doxorubicin-induced cardiotoxicity - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP712: - link: PMC6868235 title: An exome-wide rare variant analysis of Korean men identifies three novel @@ -6036,8 +6046,8 @@ WP75: Revealed Contribution of Interferon Signaling to Severity of COVID-19 (2022) - link: 10.3389/fimmu.2021.769011 title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin - Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and - Bioinformatics Analysis (2024)' + Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics + Analysis (2024)' WP78: - link: PMC8879554 title: Network-Assisted Systems Biology Analysis of the Mitochondrial Proteome in @@ -6123,9 +6133,9 @@ WP98: title: Human Monocytes Exposed to SARS-CoV-2 Display Features of Innate Immune Memory Producing High Levels of CXCL10 upon Restimulation (2023) - link: 10.7554/eLife.91729.3 - title: "Single-cell ‘omic profiles of human aortic endothelial cells in vitro and human - atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and - response to activating perturbations (2024)" + title: Single-cell ‘omic profiles of human aortic endothelial cells in vitro and + human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype + and response to activating perturbations (2024) WP982: - link: PMC7019052 title: Identification of Biological Pathways Contributing to Marbling in Skeletal