diff --git a/README.md b/README.md
index 8716c22..0ae3068 100644
--- a/README.md
+++ b/README.md
@@ -1,2 +1,12 @@
-# publish
-Collection of various templates, scripts, and dependencies for publishing.
+# texdown
+Latex, via Markdown+YAML using pandoc.
+
+## Setup
+The `conda_install.sh` script creates a conda env using the `requirements.txt` file.
+
+## Usage
+Copy/modify the `example.*` files as a template.
+
+The `render` script is an example of rendering to PDF. A couple of other useful pandoc args are in the comments at line 6. The IEEE style specification `ieee.csl` is supplied as an example of using  pandoc's `--csl` command.
+
+
diff --git a/texdown/conda_create.sh b/conda_create.sh
similarity index 100%
rename from texdown/conda_create.sh
rename to conda_create.sh
diff --git a/texdown/example.bibtex b/example.bibtex
similarity index 100%
rename from texdown/example.bibtex
rename to example.bibtex
diff --git a/texdown/example.md b/example.md
similarity index 100%
rename from texdown/example.md
rename to example.md
diff --git a/texdown/example.pdf b/example.pdf
similarity index 100%
rename from texdown/example.pdf
rename to example.pdf
diff --git a/texdown/figures/Arabidopsis_thaliana.jpg b/figures/Arabidopsis_thaliana.jpg
similarity index 100%
rename from texdown/figures/Arabidopsis_thaliana.jpg
rename to figures/Arabidopsis_thaliana.jpg
diff --git a/texdown/ieee.csl b/ieee.csl
similarity index 100%
rename from texdown/ieee.csl
rename to ieee.csl
diff --git a/jupyter/nbimages.sh b/jupyter/nbimages.sh
deleted file mode 100755
index 3e91e13..0000000
--- a/jupyter/nbimages.sh
+++ /dev/null
@@ -1,33 +0,0 @@
-# Extract the images from a jupyter notebook, with nbconvert
-#!/bin/bash
-NOTEBOOK=$1
-NAME=`basename $NOTEBOOK .ipynb`
-
-NBTMPDIR=`mktemp -d`
-TARGET_DIR=${2:-"${NAME}_figures"}
-mkdir -p $TARGET_DIR
-
-jupyter nbconvert --to latex --output-dir=$NBTMPDIR --output='figure' "$NOTEBOOK"
-
-FILE_NUM=0
-FILES=`ls $NBTMPDIR/figure_files/* | sort -t '_' -k2,2n -k3,3n`
-RSYNC_ARGS="-v -c"
-
-echo
-echo "Renaming and copying images to: $TARGET_DIR"
-echo
-
-for FILE in $FILES
-do
-    FILE_NUM=$((FILE_NUM+1))
-    SUFFIX="`echo $FILE | perl -pe 's|^.*\.(.*)$|$1|'`"
-    TARGET=$(printf '%s/figure_%02d.%s' "$TARGET_DIR" "$FILE_NUM" "$SUFFIX")
-    rsync $RSYNC_ARGS "$FILE" "$TARGET"
-    #echo "Copy: $FILE"
-    #echo "\t $TARGET"
-done
-
-echo
-echo "Removing tmpdir: $NBTMPDIR"
-rm -r $NBTMPDIR
-echo
diff --git a/latex/basic_template.tex b/latex/basic_template.tex
deleted file mode 100644
index 1f54208..0000000
--- a/latex/basic_template.tex
+++ /dev/null
@@ -1,93 +0,0 @@
-% Basic document 01
-\documentclass{article}
-
-\usepackage{geometry}
-\geometry{ a4paper%,
-    %   COMPACT
-    %   margin=10mm,
-    %   headheight=0mm,
-    %   voffset=0mm,
-    %   top=8mm,
-    %   footskip=0mm,
-    %   bottom=8mm
-}
-
-\usepackage{graphicx}
-\usepackage{placeins}
-%\usepackage{subcaption}
-%\usepackage{amsmath}
-%%\usepackage[title]{appendix}
-%%\usepackage{listings}
-%%\usepackage{color}
-
-\title{}
-\date{}
-\author{name \\
-    \small{\emph{email}}
-}
-
-
-\begin{document}
-%\textbf{}\textit{ }
-\maketitle
-
-\section{} \label{}
-figure \ref{fig:}
-
-\end{document}
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 
-
-    %   %%% SUBFIGURE %%%
-    %
-    %   \begin{figure}[h!]
-    %     \centering
-    %     \begin{subfigure}[b]{0.4\linewidth}
-    %       \includegraphics[width=\linewidth]{coffee.jpg}
-    %       \caption{Coffee.}
-    %     \end{subfigure}
-    %     \begin{subfigure}[b]{0.4\linewidth}
-    %       \includegraphics[width=\linewidth]{coffee.jpg}
-    %       \caption{More coffee.}
-    %     \end{subfigure}
-    %     \caption{The same cup of coffee. Two times.}
-    %     \label{fig:coffee}
-    %   \end{figure}
-
-    %   \begin{figure}[h!]
-    %   \centering
-    %   \begin{minipage}{0.5\linewidth}
-    %       \centering
-    %       \includegraphics[width=\linewidth]{figures_files/figures_3_0.pdf}
-    %       \caption{Histogram of Signal}
-    %       \label{fig:randomSignalHist}
-    %   \end{minipage}%
-    %   \begin{minipage}{0.5\linewidth}
-    %       \centering
-    %       \includegraphics[width=\linewidth]{figures_files/figures_6_0.pdf}
-    %       \caption{Periodogram PSD}
-    %       \label{fig:periodogram}
-    %   \end{minipage}
-    %   \end{figure}
-
-
-    %   \begin{figure}[!h]
-    %       \centering
-    %       \includegraphics[width=0.7\linewidth]{figures_files/figures_10_0.pdf}
-    %       \caption{PSD Comparison}
-    %       \label{fig:PSDcomparison}
-    %   \end{figure}
-
-    %\FloatBarrier
-
-
-
-    %   \begin{appendices}
-    %   \section{Code}
-    %   \emph{Note this code is actually Ocatve code, rather than Matlab, so maybe there are
-    %   some small differences.}
-
-    %   \lstinputlisting[language=Octave]{matlabfile.m}
-    %   \end{appendices}
-
-
diff --git a/texdown/render.sh b/render.sh
similarity index 100%
rename from texdown/render.sh
rename to render.sh
diff --git a/texdown/requirements.txt b/requirements.txt
similarity index 100%
rename from texdown/requirements.txt
rename to requirements.txt
diff --git a/texdown/README.md b/texdown/README.md
deleted file mode 100644
index a2dc4d7..0000000
--- a/texdown/README.md
+++ /dev/null
@@ -1,2 +0,0 @@
-# texdown
-Latex, via Markdown+YAML using pandoc.