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pixi.toml
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pixi.toml
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[project]
authors = ["wangyibin <[email protected]>"]
channels = ["conda-forge", "bioconda", "anaconda"]
description = "Add a short description here"
name = "CPhasing"
platforms = ["linux-64"]
version = "0.2.0"
[system-requirements]
linux = "3.10.0"
libc = "2.17"
[tasks]
activate = "LD_LIBRARY_PATH=$PWD/.pixi/envs/default/lib:$LD_LIBRARY_PATH"
[dependencies]
python = "3.12.0.*"
rich-click = "1.7.4.*"
biopython = ">=1.84,<2"
click-didyoumean = ">=0.3.1,<0.4"
colormaps = ">=0.4.2,<0.5"
dask = ">=2024.11.2,<2025"
pyranges = ">=0.1.2,<0.2"
joblib = ">=1.4.2,<2"
pandarallel = ">=1.6.5,<2"
natsort = ">=8.4.0,<9"
ncls = ">=0.0.68,<0.0.69"
cooler = ">=0.10.2,<0.11"
msgspec = ">=0.18.6,<0.19"
pandas = ">=2.2.3,<3"
numpy = ">=1.26.4,<2"
polars = ">=1.17.1,<1.18.0"
portion = ">=2.5.0,<3"
patchworklib = ">=0.6.3,<0.7"
python-igraph = ">=0.11.8,<0.12"
networkx = ">=3.4.2,<4"
pyarrow = ">=18.1.0,<19"
intervaltree = ">=3.1.0,<4"
hicmatrix = ">=17.2,<18"
seaborn = ">=0.13.2,<0.14"
scikit-learn = ">=1.5.2,<2"
pytools = ">=2024.1.18,<2025"
pysam = ">=0.22.1,<0.23"
minimap2 = ">=2.28,<3"
chromap = ">=0.2.7,<0.3"
bedtools = ">=2.31.1,<3"
seqkit = ">=2.9.0,<3"
samtools = ">=1.21,<2"
pigz = ">=2.8,<3"
wfmash = "0.17.0.*"
matplotlib = ">=3.9.3,<4"
line_profiler = ">=4.1.3,<5"
[feature.docs.system-requirements]
linux = "3.10.0"
libc = "2.17"
[feature.docs.dependencies]
mkdocs = ">=1.6.1,<2"
mkdocs-material = ">=9.5.47,<10"
mdx_truly_sane_lists = ">=1.3,<2"
mike = "2.0.0.*"
pillow = ">=9.4.0"
cairosvg = "2.7.1.*"
git-cliff = ">=2.4.0,<3"
[feature.docs.pypi-dependencies]
mkdocs-static-i18n = ">=1.2.3"
[feature.docs.tasks]
build-docs = "mkdocs build --strict"
bump-changelog = "git-cliff --unreleased --prepend CHANGELOG.md --tag $RELEASE_VERSION"
deploy-dev = "mike deploy --push dev devel"
deploy-latest = "mike deploy --push --update-aliases $RELEASE_VERSION latest"
docs = "mkdocs serve"
mike-serve = "mike serve"
[environments]
docs = { features = [
"docs",
], no-default-feature = true, solve-group = "default" }