.pyproject.toml

[build-system]
requires = ["setuptools>=40.8.0", "wheel", "setuptools_scm[toml]>=6.0"]
build-backend = "setuptools.build_meta"

[tool.poetry]
name = "CPhasing"
version = "v0.0.41"
authors = ["Yibin Wang"]
description = "CPhasing: phasing and scaffolding of contigs using Pore-C or Hi-C data"
repository = "https://github.com/wangyibin/CPhasing"
keywords = ["phasing", "scaffolding", "polyploid", "haplotype", "Pore-C", "Hi-C"]

dependencies = [
    "python >=3.7",
    "biopython >=1.78",
    "click",
    "colormaps",
    "cooler >=0.8.11",
    "natsort",
    "ncls",
    "networkx",
    "numpy >=1.22.0",
    "pandas",
    "pandarallel",
    "pyarrow >=8.0.0",
    "pyfaidx >= 0.7.0",
    "pyranges",
    "pytools >=2021.1",
    "python-igraph >= 0.9.11",
    "scipy",
    "matplotlib",
    "ray",
    "rich",
    "seaborn",
    "intervaltree",
    "hicmatrix",
    "msgspec",
    "joblib >= 1.2.0",
]

packages = [
    { include = "cphasing", from = "." }
]
readme = "README.md"