From 2afc189480410979b4a250622cffa55c12a2d3cd Mon Sep 17 00:00:00 2001
From: sdgamboa <samuel.gamboa.tuz@gmail.com>
Date: Mon, 15 Apr 2024 16:26:03 -0400
Subject: [PATCH] changing version to v1.0.0

---
 DESCRIPTION |  2 +-
 README.md   | 42 ++++++------------------------------------
 2 files changed, 7 insertions(+), 37 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 02320b6..d36b526 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: taxPPro
 Type: Package
 Title: Taxonomic and phylogenetic propagation for bugphyzz
-Version: 0.99.2
+Version: 1.0.0
 Authors@R:
     c(
         person(
diff --git a/README.md b/README.md
index 72aafb7..8f2b79e 100644
--- a/README.md
+++ b/README.md
@@ -1,47 +1,17 @@
 # taxPPro - Taxonomic and Phylogenetic Propagation
 
-A provitional package to hold functions for ASR and inheritance
-for bugphyzz
+This package contains functions and data, e.g. taxonomic trees, used for
+performing filtering and propagation of bugphyzz annotations.
 
+The functions in this package are used in the bugphyzzExports script.
+Check the waldronlab/bugphyzzExports repository on GitHun for details.
 
-The package can be installed with:
+## Installaion
 
 ```
 if (!require("BiocManager", quietly = TRUE))
     install.packages("BiocManager")
 
-BiocManager::install('sdgamboa/taxPPro')
+BiocManager::install('waldronlab/taxPPro')
 ```
 
-
-Types of data (spreadsheets)
-
-**Binary data with only TRUE values -- binary-T**
-+ Merge Attribute and Atribute_value.
-+ Don't propagate.
- 
-**Binary data with TRUE and FALSE values -- binary-TF**
-+ Merge Attribute and Attribute_value.
-+ Complete binary data with 0s.
-+ Assign 0.5 to unknown tips.
-
-**Multistate-Union with binary data with only TRUE values -- multistate-union-T**
-+ Merge Attribute and Attribute_value.
-+ Don't propagate.
-
-**Multistate-Union with binary data with both TRUE and FALSE values -- multistate-union-TF**
-+ Separate.
-+ Merge Attribute and Attribute_value.
-+ Complete binary data with 0s.
-+ Assign 0.5 to unknown tips.
-
-**Multistate-intersection -- multistate-intersection**
-+ Completey data with 0s.
-+ Assign 1 / n attributes to unknown tips.
-+ Do not export inputed zeros (when data is completed, after binning, and after inheritance).
-
-**Numeric -- numeric**
-+ Convert to range.
-
-**Range -- range**
-+ Convert to categorical.