bugsigdbr

Changes in version 1.11.4

Update stable release version for data on Zenodo

Changes in version 1.8.2

Uniform first-letter capitalization for Body site and Condition terms

Changes in version 1.2.0

importBugSigDB accepts Zenodo DOIs and Github hashes to obtain defined data releases or devel to obtain the latest version (new argument version).
Ontology-based queries for experimental factors and body sites (new functions getOntology and subsetByOntologies)
Compilation of meta-signatures from individual signatures for one body site and one condition at a time, weighted by sample size
(new function getMetaSignatures)

Version 1.0.0

released in Bioconductor 3.14!

New features

importBugSigDB: Obtain published microbial signatures from bugsigdb.org
getSignatures: Obtain microbe signatures from BugSigDB
restrictTaxLevel: Restrict microbe signatures to specific taxonomic levels
extractTaxLevel: Extract specific taxonomic levels from a microbe signature
writeGMT: Write microbe signatures to file in GMT format
browseSignature: Displaying BugSigDB signatures pages in a web browser
browseTaxon: Displaying BugSigDB taxon pages in a web browser