diff --git a/179_PICRUSt2/PICRUSt2-2.5.2-foss-2022b.eb b/179_PICRUSt2/PICRUSt2-2.5.2-foss-2022b.eb deleted file mode 100644 index cf6e747f..00000000 --- a/179_PICRUSt2/PICRUSt2-2.5.2-foss-2022b.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'PICRUSt2' -version = '2.5.2' - -homepage = 'https://github.com/picrust/picrust2' -description = """PICRUSt2 (Phylogenetic Investigation of Communities by - Reconstruction of Unobserved States) is a software for predicting - functional abundances based only on marker gene sequences.""" - -toolchain = {'name': 'foss', 'version': '2022b'} - -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), - ('h5py', '3.8.0'), - ('biom-format', '2.1.15'), -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('joblib', '1.3.1', { - 'checksums': ['1f937906df65329ba98013dc9692fe22a4c5e4a648112de500508b18a21b41e3'], - }), - (name, version, { - 'modulename': '%(namelower)s', - 'source_urls': ['https://github.com/picrust/%(namelower)s/archive'], - 'source_tmpl': 'v%(version)s.tar.gz', - 'checksums': ['a8c3832bf759233b52b41c56a0ffef72491e431fee347a7c05695596c76a1a4c'], - }), -] - -sanity_check_commands = [ - "python -c 'from picrust2.default import default_tables'" -] - -moduleclass = 'bio' diff --git a/179_PICRUSt2/biom-format-2.1.15-foss-2022b.eb b/179_PICRUSt2/biom-format-2.1.15-foss-2022b.eb deleted file mode 100644 index eef21fa6..00000000 --- a/179_PICRUSt2/biom-format-2.1.15-foss-2022b.eb +++ /dev/null @@ -1,48 +0,0 @@ -## -# This is a contribution from DeepThought HPC Service, Flinders University, Adelaide, Australia -# Homepage: https://staff.flinders.edu.au/research/deep-thought -# -# Authors:: Robert Qiao -# License:: Revised BSD -# -# Notes:: updated by Kenneth Hoste (HPC-UGent) for foss/2021b -## -# Updated: Petr Král (INUITS) - -easyblock = 'PythonPackage' - -name = 'biom-format' -version = '2.1.15' - -homepage = 'https://biom-format.org' -description = """ -The BIOM file format (canonically pronounced biome) is designed to be - a general-use format for representing biological sample by observation - contingency tables. BIOM is a recognized standard for the Earth Microbiome - Project and is a Genomics Standards Consortium supported project. -""" - -toolchain = {'name': 'foss', 'version': '2022b'} -toolchainopts = {'usempi': True} - -sources = [SOURCE_TAR_GZ] -checksums = ['3bda2096e663dc1cb6f90f51b394da0838b9be5164a44370c134ce5b3b2a4dd3'] - -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), - ('h5py', '3.8.0'), -] - -use_pip = True -sanity_pip_check = True -download_dep_fail = True - -sanity_check_paths = { - 'files': ['bin/biom'], - 'dirs': ['lib'], -} - -options = {'modulename': 'biom'} - -moduleclass = 'bio'