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User story
For a 3D array in anndata we are working with (shape n_obs x n_var x n_repeats_of_measurement), it would be very interesting to visualize the data along this third axis.
Preferred solution
Currently, a user can select a gene, and have e.g. violin plots shown for this gene. In analogy, I could imagine here to first
select a gene
select an observation
(So at this stage having selected a 1 x n_repeates_of_measurements vector.)
Then, display a scatterplot or lineplot of this vector. The values in this vector on the y-axis, and maybe just integers of the range from 1 to n_repeates_of_measurements on the x-axis?
Possible alternatives
Allow to choose multiple genes, observations
Allow for the x-axis labels to be altered rather than just the range
Opening the issue over a discussion with @ilan-gold.
For 3D things anndata, I link this issue here: scverse/anndata#244
The text was updated successfully, but these errors were encountered:
User story
For a 3D array in anndata we are working with (shape
n_obs
xn_var
xn_repeats_of_measurement
), it would be very interesting to visualize the data along this third axis.Preferred solution
Currently, a user can select a gene, and have e.g. violin plots shown for this gene. In analogy, I could imagine here to first
(So at this stage having selected a 1 x n_repeates_of_measurements vector.)
Then, display a scatterplot or lineplot of this vector. The values in this vector on the y-axis, and maybe just integers of the range from 1 to n_repeates_of_measurements on the x-axis?
Possible alternatives
Opening the issue over a discussion with @ilan-gold.
For 3D things anndata, I link this issue here: scverse/anndata#244
The text was updated successfully, but these errors were encountered: