Covid-19 boilerplate issue to create National pathogens portal (Netherlands)

[TedOliekan]

Hello, we are a By-Covid partner and we are trying to build a National pathogens portal (Netherlands) using the Covid-19 boilerplate.

Following your documentation we ran into the following problems:

1. the Yarn documentation mentioned is outdated. It took us a while to install Yarn. For your information, this is now the current documentation: https://yarnpkg.com/getting-started/install

2. When we run the boilerplate we get an unexpected browser result that does not match the Covid-19 website (https://visual-framework.github.io/vf-covid19-boilerplate/) design. The text is showing in a correct way, and so is the logo, but not the structure (please see the attached screenshot).

Can you help us solve issue nr. 2 please?

Kind regards, Ted Oliekan, Clara Amid, Robin Navest

[TedOliekan]

Added the command output(warnings)
pathogensportal command output.txt

[bhushan-ebi]

Hi @TedOliekan ,

Thanks for reaching out. The documentation and the code itself might be outdated and it'll take some time to fix and bring it to latest.

We actually have a dummy HTML site for Covid-19 portal with all static pages.
It's in this location - https://github.com/visual-framework/vf-covid19-boilerplate/tree/master/src/pages
And the corresponding UI is here - https://visual-framework.github.io/vf-covid19-boilerplate/

Is this something you can use for your site for now?

Regards,
Bhushan

[CA2023]

Hello @bhushan-ebi,

Thank you for your quick reply, we much appreciate it!

The boilerplate you are referring to (https://github.com/visual-framework/vf-covid19-boilerplate) is exactly the one we used! But the visual outcome wasn't the same, as shown on the screenshot.

However, my colleague @TedOliekan found your trouble shooting page (https://stable.visual-framework.dev/troubleshooting/) and fixed the issue. The problem was more with the symlinks in the component directory. So, thanks for the troubleshooting page! That's sorted :-)

However, we have another request: I was in touch with Marianna Ventouratou from the EBI, who has been the project manager for the COVID-19 portal and she was going to send me the colour scheme, banner and a logo (with the Dutch flag) for the Pathogens Portal (https://www.pathogensportal.org/) so we can replace the COVID-19 scheme with the one for the Pathogens Portal. We are building a Dutch Pathogens Portal as part of the BY-COVID project.

Marianna is currently absent, so can you help us with these (colour code, banners and logo with the Dutch flag)? Or can you point us to the right EBI contact, please?

Thanks in advance!
Clara Amid, Ted Oliekan, Robin Navest

[TedOliekan]

Thanks Clara

…

________________________________ From: CA2023 ***@***.***> Sent: Tuesday, August 6, 2024 4:39:33 PM To: visual-framework/vf-covid19-boilerplate ***@***.***> Cc: Ted Oliekan ***@***.***>; Mention ***@***.***> Subject: Re: [visual-framework/vf-covid19-boilerplate] Covid-19 boilerplate issue to create National pathogens portal (Netherlands) (Issue #50) Waarschuwing: Deze e-mail is afkomstig van buiten de organisatie. Klik niet op links en open geen bijlagen, tenzij u de afzender herkent en weet dat de inhoud veilig is. Caution: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and know the content is safe. Hello @bhushan-ebi<https://github.com/bhushan-ebi>, Thank you for your quick reply, we much appreciate it! The boilerplate you are referring to (https://github.com/visual-framework/vf-covid19-boilerplate) is exactly the one we used! But the visual outcome wasn't the same, as shown on the screenshot. However, my colleague @TedOliekan<https://github.com/TedOliekan> found your trouble shooting page (https://stable.visual-framework.dev/troubleshooting/) and fixed the issue. The problem was more with the symlinks in the component directory. So, thanks for the troubleshooting page! That's sorted :-) However, we have another request: I was in touch with Marianna Ventouratou from the EBI, who has been the project manager for the COVID-19 portal and she was going to send me the colour scheme, banner and a logo (with the Dutch flag) for the Pathogens Portal (https://www.pathogensportal.org/) so we can replace the COVID-19 scheme with the one for the Pathogens Portal. We are building a Dutch Pathogens Portal as part of the BY-COVID project. Marianna is currently absent, so can you help us with these (colour code, banners and logo with the Dutch flag)? Or can you point us to the right EBI contact, please? Thanks in advance! Clara Amid, Ted Oliekan, Robin Navest — Reply to this email directly, view it on GitHub<#50 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/BKKKRYU7XNKN34OXS7554LDZQDN2LAVCNFSM6AAAAABMAJ53ACVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDENZRGQ3DCNBYG4>. You are receiving this because you were mentioned.Message ID: ***@***.***>

[bhushan-ebi]

Hi Clara, glad that the issue is resolved now by @TedOliekan.
By the way, the link (https://github.com/visual-framework/vf-covid19-boilerplate/tree/master/src/pages) I shared is a inner folder of the main repo and has static HTML pages which when downloaded can be used without depending on the framework. But since the issue is resolved now, you can keep using the main code.

As for the assets you needed for Pathogen portal, it seems many team members might be away for summer vacations but let me see if anyone is available and can help you out.

Regards,
Bhushan

[CA2023]

Hi Bhushan,
Ah, sorry, did not realise that!
Well, as you say, good that the issue is resolved but also good to know the static HTML is there too.

Many thanks for your help finding out if someone can help us here! We very much appreciate it and will look forward to hearing back from you :-)

Kind regards,
Clara

[bhushan-ebi]

Hi Clara,

Sure no problem.
For the assets you need for pathogen portal Marianna mentioned that she would be responding to your request and will get back to you with those assets.

If there's a mail thread you already have open for Marianna, please let me know if it's fine to close this issue now.

Regards,
Bhushan

[CA2023]

Hi Bhushan,

Thanks for checking with Marianna! I assumed she was absent from work currently but if you have checked then I am sure I will hear back from her :-) You can close this ticket. Thanks for your help.

Kind regards,
Clara

[CA2023]

@bhushan-ebi,
Hi Bhushan,
I have now received all the assets for the Pathogens Portal. You can definitely close this ticket now.
Thank you!