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.gitignore
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.classpath
.project
.factorypath
.settings/
/.pydevproject
/listserv/
/log4j.properties
/vcell_debug_server.properties
/vcell_localClient.properties
/vfrapPaper/
jsbml.log
target/
*.pyc
*.so
*.so.*
*.dll
*.dylib
*.exe
*_x64
testzip
ziptool
.idea
.vagrant
/update/
/.checksums
vcell-client/UserDocumentation/originalXML/helpSearchConfig.txt
*.iml
.metadata/
### Eclipse ###
.metadata
bin/
tmp/
*.tmp
*.bak
*.swp
*~.nib
local.properties
.settings/
.loadpath
.recommenders
stdOut.txt
# External tool builders
.externalToolBuilders/
# Locally stored "Eclipse launch configurations"
*.launch
# PyDev specific (Python IDE for Eclipse)
*.pydevproject
# CDT-specific (C/C++ Development Tooling)
.cproject
# CDT- autotools
.autotools
# Java annotation processor (APT)
.factorypath
# PDT-specific (PHP Development Tools)
.buildpath
# sbteclipse plugin
.target
# Tern plugin
.tern-project
# TeXlipse plugin
.texlipse
# STS (Spring Tool Suite)
.springBeans
# Code Recommenders
.recommenders/
# Annotation Processing
.apt_generated/
# Scala IDE specific (Scala & Java development for Eclipse)
.cache-main
.scala_dependencies
.worksheet
### Eclipse Patch ###
# Eclipse Core
.project
# JDT-specific (Eclipse Java Development Tools)
.classpath
# Annotation Processing
.apt_generated
.sts4-cache/
### Java ###
# Compiled class file
*.class
# Log file
*.log
# BlueJ files
*.ctxt
# Mobile Tools for Java (J2ME)
.mtj.tmp/
# Package Files #
*.jar
*.war
*.nar
*.ear
*.zip
*.tar.gz
*.rar
# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml
hs_err_pid*
### macOS ###
# General
.DS_Store
.AppleDouble
.LSOverride
# Icon must end with two \r
Icon
# Thumbnails
._*
# Files that might appear in the root of a volume
.DocumentRevisions-V100
.fseventsd
.Spotlight-V100
.TemporaryItems
.Trashes
.VolumeIcon.icns
.com.apple.timemachine.donotpresent
# Directories potentially created on remote AFP share
.AppleDB
.AppleDesktop
Network Trash Folder
Temporary Items
.apdisk
### VisualStudioCode ###
.vscode/*
!.vscode/settings.json
!.vscode/tasks.json
!.vscode/launch.json
!.vscode/extensions.json
### VisualStudioCode Patch ###
# Ignore all local history of files
.history
### envFile and Output file ###
# Ignore all local .env and generated output file
.env
sample_model/out
### Windows ###
# Windows thumbnail cache files
Thumbs.db
Thumbs.db:encryptable
ehthumbs.db
ehthumbs_vista.db
# Dump file
*.stackdump
# Folder config file
[Dd]esktop.ini
# Recycle Bin used on file shares
$RECYCLE.BIN/
# Windows Installer files
*.cab
*.msi
*.msix
*.msm
*.msp
# Windows shortcuts
*.lnk
!results/.gitkeep
results/*
/sample_omex_files/_00_omex_test_cvode.omex
/sample_omex_files/_00_omex_test_cvode1.omex
/sample_omex_files/_00_omex_test_cvode_IDA.omex
/sample_omex_files/__bm35_test_stochastic.omex
/status.yml
Makefile
run_sim.sh
remove_temp.sh
vcell-client/UserDocumentation/originalXML/helpSearchConfig.txt
.vscode/launch.json