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fix DatabaseConstraint exceptions upon DB Cleanup and pathological Biomodel saves. #840

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Tracked by #1032
jcschaff opened this issue Mar 20, 2023 · 1 comment · May be fixed by #841
Open
Tracked by #1032

fix DatabaseConstraint exceptions upon DB Cleanup and pathological Biomodel saves. #840

jcschaff opened this issue Mar 20, 2023 · 1 comment · May be fixed by #841
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@jcschaff
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Background - two problems - one on save, one on delete/cleanup

  • ~260 times a day, the health monitor saves the exact same BioModel (same XML) with cleared biomodel key.
  • incomplete periodic cleanup of orphaned records (once a day).
    • cbit.vcell.modeldb.DatabaseServerImpl.cleanupDatabase(DatabaseServerImpl.java:133) fails with a complementary failure (java.sql.SQLIntegrityConstraintViolationException: ORA-02292: integrity constraint (VCELL.SYS_C0022037) violated - child record found)
    • the order of the delete operations should have prevented such a failure.
@jcschaff jcschaff added VCell-7.5.0 Needed for Release 7.5 VCell-7.5.1 labels Mar 20, 2023
@jcschaff jcschaff self-assigned this Mar 20, 2023
@jcschaff
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Strategy

  • test BioModel saves with randomizedBioModel keys to try to make the save problem more reproducible.
  • review DatabaseServerImpl.cleanupDatabase() to look for problems and add logging as needed to help diagnose.

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