diff --git a/vcell-cli/src/main/java/org/vcell/cli/run/ExecuteCommand.java b/vcell-cli/src/main/java/org/vcell/cli/run/ExecuteCommand.java index 30dc9afacb..acf7325985 100644 --- a/vcell-cli/src/main/java/org/vcell/cli/run/ExecuteCommand.java +++ b/vcell-cli/src/main/java/org/vcell/cli/run/ExecuteCommand.java @@ -13,7 +13,7 @@ import java.io.File; import java.util.concurrent.Callable; -@Command(name = "execute", description = "run .vcml or .omex files via Python API") +@Command(name = "execute", description = "run .vcml or .omex files") public class ExecuteCommand implements Callable { private final static Logger logger = org.apache.logging.log4j.LogManager.getLogger(ExecuteCommand.class); diff --git a/vcell-cli/src/main/java/org/vcell/cli/run/ExecuteImpl.java b/vcell-cli/src/main/java/org/vcell/cli/run/ExecuteImpl.java index f1556bee3e..fd6d38adc3 100644 --- a/vcell-cli/src/main/java/org/vcell/cli/run/ExecuteImpl.java +++ b/vcell-cli/src/main/java/org/vcell/cli/run/ExecuteImpl.java @@ -38,6 +38,7 @@ public static void batchMode(File dirOfArchivesToProcess, File outputDir, CLIRec // Build statuses for (File inputFile : inputFiles){ String bioModelBaseName = FileUtils.getBaseName(inputFile.getName()); + logger.debug("Performing initial processing of `" + bioModelBaseName + "` (source file: `" + inputFile.getName() +"`)"); String outputBaseDir = outputDir.getAbsolutePath(); // bioModelBaseName = input file without the path String targetOutputDir = Paths.get(outputBaseDir, bioModelBaseName).toString(); File adjustedOutputDir = new File(targetOutputDir);