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batch_ltrstruc.vbs
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batch_ltrstruc.vbs
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''-----------------------------------------------------------+
'' batch_ltrstruc.vbs - Run LTR_Struc in batch mode |
''-----------------------------------------------------------+
'' |
'' AUTHOR: James C. Estill |
'' CONTACT: JamesEstill_at_gmail.com |
'' STARTED: 12/13/2006 |
'' DESCRIPTION: |
'' Faciliates running the LTR_Struc program in |
'' a batch mode. This prevents the user from needing |
'' to answer command line prompts and hit the |
'' enter key for each BAC. By default this program will |
'' run LTR_Struc in level 1 to find the most LTR Retros. |
'' |
'' REQUIRED SOFTWARE: |
'' LTR_Struc can be obtained at: |
'' http://www.genetics.uga.edu/retrolab/data/LTR_Struc.html |
'' |
'' SEE ALSO: |
'' DAWG-PAWS |
'' This program is part of the DAWG-PAWS set of |
'' scripts designed for the annotation of plant |
'' genomes. DAWG-PAWS is available from SourceForge |
'' availalbe from SourceForge. |
'' http://dawgpaws.sourceforge.net/ |
'' |
'' |
'' From the command line this can be launched |
'' with the Cscript program |
'' Cscript.exe //NoLogo batch_ltrstruc.vbs | cmd.exe |
''-----------------------------------------------------------+
Wscript.Stdout.WriteLine "LTR_STRUC_1_1"
Wscript.Sleep 1000
Wscript.Stdout.WriteLine "Y"
Wscript.Sleep 1000
'' This select N for using the standard settings
Wscript.Stdout.WriteLine "N"
'' This selects 1 for the most stringent
Wscript.Stdout.WriteLine "1"