-
Notifications
You must be signed in to change notification settings - Fork 3
/
34_clover_pallescens.log
1001 lines (929 loc) · 41.5 KB
/
34_clover_pallescens.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012) (format=pdflatex 2012.10.26) 9 JUL 2014 15:21
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**34_clover_pallescens.tex
(./34_clover_pallescens.tex
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, ge
rman-x-2012-05-30, ngerman-x-2012-05-30, afrikaans, ancientgreek, ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis
h, french, friulan, galician, german, ngerman, swissgerman, monogreek, greek, h
ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, ma
rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian,
kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk,
polish, portuguese, romanian, romansh, russian, sanskrit, serbian, serbianc, s
lovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian,
welsh, loaded.
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/article.cls
Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/size10.clo
File: size10.clo 2007/10/19 v1.4h Standard LaTeX file (size option)
)
\c@part=\count79
\c@section=\count80
\c@subsection=\count81
\c@subsubsection=\count82
\c@paragraph=\count83
\c@subparagraph=\count84
\c@figure=\count85
\c@table=\count86
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/graphicx.sty
Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR)
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 1999/03/16 v1.13 key=value parser (DPC)
\KV@toks@=\toks14
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/graphics.sty
Package: graphics 2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR)
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/trig.sty
Package: trig 1999/03/16 v1.09 sin cos tan (DPC)
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/graphics.cfg
File: graphics.cfg 2010/04/23 v1.9 graphics configuration of TeX Live
)
Package graphics Info: Driver file: pdftex.def on input line 91.
(/usr/local/texlive/2012/texmf-dist/tex/latex/pdftex-def/pdftex.def
File: pdftex.def 2011/05/27 v0.06d Graphics/color for pdfTeX
(/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/infwarerr.sty
Package: infwarerr 2010/04/08 v1.3 Providing info/warning/error messages (HO)
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/ltxcmds.sty
Package: ltxcmds 2011/11/09 v1.22 LaTeX kernel commands for general use (HO)
)
\Gread@gobject=\count87
))
\Gin@req@height=\dimen103
\Gin@req@width=\dimen104
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/color.sty
Package: color 2005/11/14 v1.0j Standard LaTeX Color (DPC)
(/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/color.cfg
File: color.cfg 2007/01/18 v1.5 color configuration of teTeX/TeXLive
)
Package color Info: Driver file: pdftex.def on input line 130.
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/framed/framed.sty
Package: framed 2011/10/22 v 0.96: framed or shaded text with page breaks
\OuterFrameSep=\skip43
\fb@frw=\dimen105
\fb@frh=\dimen106
\FrameRule=\dimen107
\FrameSep=\dimen108
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/alltt.sty
Package: alltt 1997/06/16 v2.0g defines alltt environment
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/mathpazo.sty
Package: mathpazo 2005/04/12 PSNFSS-v9.2a Palatino w/ Pazo Math (D.Puga, WaS)
\symupright=\mathgroup4
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/fontenc.sty
Package: fontenc 2005/09/27 v1.99g Standard LaTeX package
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/t1enc.def
File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file
LaTeX Font Info: Redeclaring font encoding T1 on input line 43.
))
(/usr/local/texlive/2012/texmf-dist/tex/latex/geometry/geometry.sty
Package: geometry 2010/09/12 v5.6 Page Geometry
(/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/ifpdf.sty
Package: ifpdf 2011/01/30 v2.3 Provides the ifpdf switch (HO)
Package ifpdf Info: pdfTeX in PDF mode is detected.
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/ifvtex.sty
Package: ifvtex 2010/03/01 v1.5 Detect VTeX and its facilities (HO)
Package ifvtex Info: VTeX not detected.
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/ifxetex/ifxetex.sty
Package: ifxetex 2010/09/12 v0.6 Provides ifxetex conditional
)
\Gm@cnth=\count88
\Gm@cntv=\count89
\c@Gm@tempcnt=\count90
\Gm@bindingoffset=\dimen109
\Gm@wd@mp=\dimen110
\Gm@odd@mp=\dimen111
\Gm@even@mp=\dimen112
\Gm@layoutwidth=\dimen113
\Gm@layoutheight=\dimen114
\Gm@layouthoffset=\dimen115
\Gm@layoutvoffset=\dimen116
\Gm@dimlist=\toks15
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/url/url.sty
\Urlmuskip=\muskip10
Package: url 2006/04/12 ver 3.3 Verb mode for urls, etc.
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/hyperref/hyperref.sty
Package: hyperref 2012/05/13 v6.82q Hypertext links for LaTeX
(/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
Package: hobsub-hyperref 2012/05/28 v1.13 Bundle oberdiek, subset hyperref (HO)
(/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty
Package: hobsub-generic 2012/05/28 v1.13 Bundle oberdiek, subset generic (HO)
Package: hobsub 2012/05/28 v1.13 Construct package bundles (HO)
Package hobsub Info: Skipping package `infwarerr' (already loaded).
Package hobsub Info: Skipping package `ltxcmds' (already loaded).
Package: ifluatex 2010/03/01 v1.3 Provides the ifluatex switch (HO)
Package ifluatex Info: LuaTeX not detected.
Package hobsub Info: Skipping package `ifvtex' (already loaded).
Package: intcalc 2007/09/27 v1.1 Expandable calculations with integers (HO)
Package hobsub Info: Skipping package `ifpdf' (already loaded).
Package: etexcmds 2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
Package etexcmds Info: Could not find \expanded.
(etexcmds) That can mean that you are not using pdfTeX 1.50 or
(etexcmds) that some package has redefined \expanded.
(etexcmds) In the latter case, load this package earlier.
Package: kvsetkeys 2012/04/25 v1.16 Key value parser (HO)
Package: kvdefinekeys 2011/04/07 v1.3 Define keys (HO)
Package: pdftexcmds 2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO
)
Package pdftexcmds Info: LuaTeX not detected.
Package pdftexcmds Info: \pdf@primitive is available.
Package pdftexcmds Info: \pdf@ifprimitive is available.
Package pdftexcmds Info: \pdfdraftmode found.
Package: pdfescape 2011/11/25 v1.13 Implements pdfTeX's escape features (HO)
Package: bigintcalc 2012/04/08 v1.3 Expandable calculations on big integers (HO
)
Package: bitset 2011/01/30 v1.1 Handle bit-vector datatype (HO)
Package: uniquecounter 2011/01/30 v1.2 Provide unlimited unique counter (HO)
)
Package hobsub Info: Skipping package `hobsub' (already loaded).
Package: letltxmacro 2010/09/02 v1.4 Let assignment for LaTeX macros (HO)
Package: hopatch 2012/05/28 v1.2 Wrapper for package hooks (HO)
Package: xcolor-patch 2011/01/30 xcolor patch
Package: atveryend 2011/06/30 v1.8 Hooks at the very end of document (HO)
Package atveryend Info: \enddocument detected (standard20110627).
Package: atbegshi 2011/10/05 v1.16 At begin shipout hook (HO)
Package: refcount 2011/10/16 v3.4 Data extraction from label references (HO)
Package: hycolor 2011/01/30 v1.7 Color options for hyperref/bookmark (HO)
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/oberdiek/kvoptions.sty
Package: kvoptions 2011/06/30 v3.11 Key value format for package options (HO)
)
\@linkdim=\dimen117
\Hy@linkcounter=\count91
\Hy@pagecounter=\count92
(/usr/local/texlive/2012/texmf-dist/tex/latex/hyperref/pd1enc.def
File: pd1enc.def 2012/05/13 v6.82q Hyperref: PDFDocEncoding definition (HO)
)
\Hy@SavedSpaceFactor=\count93
(/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/hyperref.cfg
File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive
)
Package hyperref Info: Option `unicode' set `true' on input line 3941.
(/usr/local/texlive/2012/texmf-dist/tex/latex/hyperref/puenc.def
File: puenc.def 2012/05/13 v6.82q Hyperref: PDF Unicode definition (HO)
)
Package hyperref Info: Option `pdfusetitle' set `true' on input line 3941.
Package hyperref Info: Option `bookmarks' set `true' on input line 3941.
Package hyperref Info: Option `bookmarksnumbered' set `true' on input line 3941
.
Package hyperref Info: Option `bookmarksopen' set `true' on input line 3941.
Package hyperref Info: Option `breaklinks' set `false' on input line 3941.
Package hyperref Info: Option `colorlinks' set `false' on input line 3941.
Package hyperref Info: Hyper figures OFF on input line 4062.
Package hyperref Info: Link nesting OFF on input line 4067.
Package hyperref Info: Hyper index ON on input line 4070.
Package hyperref Info: Plain pages OFF on input line 4077.
Package hyperref Info: Backreferencing OFF on input line 4082.
Package hyperref Info: Implicit mode ON; LaTeX internals redefined.
Package hyperref Info: Bookmarks ON on input line 4300.
\c@Hy@tempcnt=\count94
LaTeX Info: Redefining \url on input line 4653.
\Fld@menulength=\count95
\Field@Width=\dimen118
\Fld@charsize=\dimen119
Package hyperref Info: Hyper figures OFF on input line 5773.
Package hyperref Info: Link nesting OFF on input line 5778.
Package hyperref Info: Hyper index ON on input line 5781.
Package hyperref Info: backreferencing OFF on input line 5788.
Package hyperref Info: Link coloring OFF on input line 5793.
Package hyperref Info: Link coloring with OCG OFF on input line 5798.
Package hyperref Info: PDF/A mode OFF on input line 5803.
LaTeX Info: Redefining \ref on input line 5843.
LaTeX Info: Redefining \pageref on input line 5847.
\Hy@abspage=\count96
\c@Item=\count97
\c@Hfootnote=\count98
)
Package hyperref Message: Driver (autodetected): hpdftex.
(/usr/local/texlive/2012/texmf-dist/tex/latex/hyperref/hpdftex.def
File: hpdftex.def 2012/05/13 v6.82q Hyperref driver for pdfTeX
\Fld@listcount=\count99
\c@bookmark@seq@number=\count100
(/usr/local/texlive/2012/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty
Package: rerunfilecheck 2011/04/15 v1.7 Rerun checks for auxiliary files (HO)
Package uniquecounter Info: New unique counter `rerunfilecheck' on input line 2
82.
)
\Hy@SectionHShift=\skip44
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/listings/listings.sty
\lst@mode=\count101
\lst@gtempboxa=\box26
\lst@token=\toks16
\lst@length=\count102
\lst@currlwidth=\dimen120
\lst@column=\count103
\lst@pos=\count104
\lst@lostspace=\dimen121
\lst@width=\dimen122
\lst@newlines=\count105
\lst@lineno=\count106
\lst@maxwidth=\dimen123
(/usr/local/texlive/2012/texmf-dist/tex/latex/listings/lstmisc.sty
File: lstmisc.sty 2007/02/22 1.4 (Carsten Heinz)
\c@lstnumber=\count107
\lst@skipnumbers=\count108
\lst@framebox=\box27
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/listings/listings.cfg
File: listings.cfg 2007/02/22 1.4 listings configuration
))
Package: listings 2007/02/22 1.4 (Carsten Heinz)
(/usr/local/texlive/2012/texmf-dist/tex/latex/listings/lstlang1.sty
File: lstlang1.sty 2004/09/05 1.3 listings language file
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgfplots/pgfplotstable.sty
Package: pgfplotstable 2011/12/19 Part of pgfplots
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgfplots/pgfplots.sty
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/pgfplots.revision.tex)
Package: pgfplots 2011/12/29 v1.5.1 (git show 1.5.1-4-g53e640f )
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgf/frontendlayer/tikz.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgf/basiclayer/pgf.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgf/utilities/pgfrcs.sty
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.te
x
\pgfutil@everybye=\toks17
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def
\pgfutil@abb=\box28
(/usr/local/texlive/2012/texmf-dist/tex/latex/ms/everyshi.sty
Package: everyshi 2001/05/15 v3.00 EveryShipout Package (MS)
))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/utilities/pgfrcs.code.tex
Package: pgfrcs 2010/10/25 v2.10 (rcs-revision 1.24)
))
Package: pgf 2008/01/15 v2.10 (rcs-revision 1.12)
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgf/systemlayer/pgfsys.sty
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/systemlayer/pgfsys.code.tex
Package: pgfsys 2010/06/30 v2.10 (rcs-revision 1.37)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex
\pgfkeys@pathtoks=\toks18
\pgfkeys@temptoks=\toks19
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/utilities/pgfkeysfiltered.c
ode.tex
\pgfkeys@tmptoks=\toks20
))
\pgf@x=\dimen124
\pgf@y=\dimen125
\pgf@xa=\dimen126
\pgf@ya=\dimen127
\pgf@xb=\dimen128
\pgf@yb=\dimen129
\pgf@xc=\dimen130
\pgf@yc=\dimen131
\w@pgf@writea=\write3
\r@pgf@reada=\read1
\c@pgf@counta=\count109
\c@pgf@countb=\count110
\c@pgf@countc=\count111
\c@pgf@countd=\count112
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/systemlayer/pgf.cfg
File: pgf.cfg 2008/05/14 (rcs-revision 1.7)
)
Package pgfsys Info: Driver file for pgf: pgfsys-pdftex.def on input line 900.
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.d
ef
File: pgfsys-pdftex.def 2009/05/22 (rcs-revision 1.26)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-common-p
df.def
File: pgfsys-common-pdf.def 2008/05/19 (rcs-revision 1.10)
)))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.
code.tex
File: pgfsyssoftpath.code.tex 2008/07/18 (rcs-revision 1.7)
\pgfsyssoftpath@smallbuffer@items=\count113
\pgfsyssoftpath@bigbuffer@items=\count114
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/systemlayer/pgfsysprotocol.
code.tex
File: pgfsysprotocol.code.tex 2006/10/16 (rcs-revision 1.4)
)) (/usr/local/texlive/2012/texmf-dist/tex/latex/xcolor/xcolor.sty
Package: xcolor 2007/01/21 v2.11 LaTeX color extensions (UK)
(/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/color.cfg
File: color.cfg 2007/01/18 v1.5 color configuration of teTeX/TeXLive
)
Package xcolor Info: Driver file: pdftex.def on input line 225.
LaTeX Info: Redefining \color on input line 702.
Package xcolor Info: Model `cmy' substituted by `cmy0' on input line 1337.
Package xcolor Info: Model `hsb' substituted by `rgb' on input line 1341.
Package xcolor Info: Model `RGB' extended on input line 1353.
Package xcolor Info: Model `HTML' substituted by `rgb' on input line 1355.
Package xcolor Info: Model `Hsb' substituted by `hsb' on input line 1356.
Package xcolor Info: Model `tHsb' substituted by `hsb' on input line 1357.
Package xcolor Info: Model `HSB' substituted by `hsb' on input line 1358.
Package xcolor Info: Model `Gray' substituted by `gray' on input line 1359.
Package xcolor Info: Model `wave' substituted by `hsb' on input line 1360.
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcore.code.tex
Package: pgfcore 2010/04/11 v2.10 (rcs-revision 1.7)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathcalc.code.tex
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathutil.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathparser.code.tex
\pgfmath@dimen=\dimen132
\pgfmath@count=\count115
\pgfmath@box=\box29
\pgfmath@toks=\toks21
\pgfmath@stack@operand=\toks22
\pgfmath@stack@operation=\toks23
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.code.
tex
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.basic
.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.trigo
nometric.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.rando
m.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.compa
rison.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.base.
code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.round
.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.misc.
code.tex)))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/math/pgfmathfloat.code.tex
\c@pgfmathroundto@lastzeros=\count116
))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepoints.co
de.tex
File: pgfcorepoints.code.tex 2010/04/09 (rcs-revision 1.20)
\pgf@picminx=\dimen133
\pgf@picmaxx=\dimen134
\pgf@picminy=\dimen135
\pgf@picmaxy=\dimen136
\pgf@pathminx=\dimen137
\pgf@pathmaxx=\dimen138
\pgf@pathminy=\dimen139
\pgf@pathmaxy=\dimen140
\pgf@xx=\dimen141
\pgf@xy=\dimen142
\pgf@yx=\dimen143
\pgf@yy=\dimen144
\pgf@zx=\dimen145
\pgf@zy=\dimen146
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathconst
ruct.code.tex
File: pgfcorepathconstruct.code.tex 2010/08/03 (rcs-revision 1.24)
\pgf@path@lastx=\dimen147
\pgf@path@lasty=\dimen148
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathusage
.code.tex
File: pgfcorepathusage.code.tex 2008/04/22 (rcs-revision 1.12)
\pgf@shorten@end@additional=\dimen149
\pgf@shorten@start@additional=\dimen150
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcorescopes.co
de.tex
File: pgfcorescopes.code.tex 2010/09/08 (rcs-revision 1.34)
\pgfpic=\box30
\pgf@hbox=\box31
\pgf@layerbox@main=\box32
\pgf@picture@serial@count=\count117
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcoregraphicst
ate.code.tex
File: pgfcoregraphicstate.code.tex 2008/04/22 (rcs-revision 1.9)
\pgflinewidth=\dimen151
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransform
ations.code.tex
File: pgfcoretransformations.code.tex 2009/06/10 (rcs-revision 1.11)
\pgf@pt@x=\dimen152
\pgf@pt@y=\dimen153
\pgf@pt@temp=\dimen154
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcorequick.cod
e.tex
File: pgfcorequick.code.tex 2008/10/09 (rcs-revision 1.3)
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreobjects.c
ode.tex
File: pgfcoreobjects.code.tex 2006/10/11 (rcs-revision 1.2)
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathproce
ssing.code.tex
File: pgfcorepathprocessing.code.tex 2008/10/09 (rcs-revision 1.8)
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcorearrows.co
de.tex
File: pgfcorearrows.code.tex 2008/04/23 (rcs-revision 1.11)
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreshade.cod
e.tex
File: pgfcoreshade.code.tex 2008/11/23 (rcs-revision 1.13)
\pgf@max=\dimen155
\pgf@sys@shading@range@num=\count118
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreimage.cod
e.tex
File: pgfcoreimage.code.tex 2010/03/25 (rcs-revision 1.16)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreexternal.
code.tex
File: pgfcoreexternal.code.tex 2010/09/01 (rcs-revision 1.17)
\pgfexternal@startupbox=\box33
))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcorelayers.co
de.tex
File: pgfcorelayers.code.tex 2010/08/27 (rcs-revision 1.2)
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretranspare
ncy.code.tex
File: pgfcoretransparency.code.tex 2008/01/17 (rcs-revision 1.2)
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepatterns.
code.tex
File: pgfcorepatterns.code.tex 2009/07/02 (rcs-revision 1.3)
)))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/modules/pgfmoduleshapes.cod
e.tex
File: pgfmoduleshapes.code.tex 2010/09/09 (rcs-revision 1.13)
\pgfnodeparttextbox=\box34
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/modules/pgfmoduleplot.code.
tex
File: pgfmoduleplot.code.tex 2010/10/22 (rcs-revision 1.8)
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version
-0-65.sty
Package: pgfcomp-version-0-65 2007/07/03 v2.10 (rcs-revision 1.7)
\pgf@nodesepstart=\dimen156
\pgf@nodesepend=\dimen157
)
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version
-1-18.sty
Package: pgfcomp-version-1-18 2007/07/23 v2.10 (rcs-revision 1.1)
))
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgf/utilities/pgffor.sty
(/usr/local/texlive/2012/texmf-dist/tex/latex/pgf/utilities/pgfkeys.sty
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex)
) (/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/utilities/pgffor.code.tex
Package: pgffor 2010/03/23 v2.10 (rcs-revision 1.18)
\pgffor@iter=\dimen158
\pgffor@skip=\dimen159
\pgffor@stack=\toks24
\pgffor@toks=\toks25
))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/frontendlayer/tikz/tikz.cod
e.tex
Package: tikz 2010/10/13 v2.10 (rcs-revision 1.76)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/libraries/pgflibraryplothan
dlers.code.tex
File: pgflibraryplothandlers.code.tex 2010/05/31 v2.10 (rcs-revision 1.15)
\pgf@plot@mark@count=\count119
\pgfplotmarksize=\dimen160
)
\tikz@lastx=\dimen161
\tikz@lasty=\dimen162
\tikz@lastxsaved=\dimen163
\tikz@lastysaved=\dimen164
\tikzleveldistance=\dimen165
\tikzsiblingdistance=\dimen166
\tikz@figbox=\box35
\tikz@tempbox=\box36
\tikztreelevel=\count120
\tikznumberofchildren=\count121
\tikznumberofcurrentchild=\count122
\tikz@fig@count=\count123
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/modules/pgfmodulematrix.cod
e.tex
File: pgfmodulematrix.code.tex 2010/08/24 (rcs-revision 1.4)
\pgfmatrixcurrentrow=\count124
\pgfmatrixcurrentcolumn=\count125
\pgf@matrix@numberofcolumns=\count126
)
\tikz@expandcount=\count127
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie
s/tikzlibrarytopaths.code.tex
File: tikzlibrarytopaths.code.tex 2008/06/17 v2.10 (rcs-revision 1.2)
)))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/pgfplots.code.tex
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/pgfplotscore.code.tex
\t@pgfplots@toka=\toks26
\t@pgfplots@tokb=\toks27
\t@pgfplots@tokc=\toks28
\pgfplots@tmpa=\dimen167
\c@pgfplots@coordindex=\count128
\c@pgfplots@scanlineindex=\count129
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/sys/pgfplotssysgeneric
.code.tex))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/libs/pgfplotslibrary.c
ode.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/oldpgfcompatib/pgfplot
soldpgfsupp_loader.code.tex
Package pgfplots: loading complementary code for your PGF version...
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/oldpgfcompatib/pgfplot
soldpgfsupp_misc.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/oldpgfcompatib/pgfplot
soldpgfsupp_pgfkeys.code.tex
\pgfkeys@pathtoks=\toks29
\pgfkeys@temptoks=\toks30
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/oldpgfcompatib/pgfplot
soldpgfsupp_pgfkeysfiltered.code.tex
\pgfkeys@tmptoks=\toks31
))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/oldpgfcompatib/pgfplot
soldpgfsupp_pgfmathfloat.code.tex
\c@pgfmathroundto@lastzeros=\count130
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/oldpgfcompatib/pgfplot
soldpgfsupp_pgflibraryplothandlers.code.tex
File: pgflibraryplothandlers.code.tex 2011/12/28 v2.10 (rcs-revision 1.16)
\pgf@plot@mark@count=\count131
\pgfplotmarksize=\dimen168
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/oldpgfcompatib/pgfplot
soldpgfsupp_pgflibraryfpu.code.tex))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/util/pgfplotsutil.code
.tex
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/liststructure/pgfplots
liststructure.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/liststructure/pgfplots
liststructureext.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/liststructure/pgfplots
array.code.tex
\c@pgfplotsarray@tmp=\count132
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/liststructure/pgfplots
matrix.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/numtable/pgfplotstable
shared.code.tex
\c@pgfplotstable@counta=\count133
\t@pgfplotstable@a=\toks32
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/liststructure/pgfplots
deque.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/util/pgfplotsbinary.co
de.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/util/pgfplotsutil.verb
.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/libs/pgflibrarypgfplot
s.surfshading.code.tex
\c@pgfplotslibrarysurf@no=\count134
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/sys/pgflibrarypgfplots
.surfshading.pgfsys-pdftex.def)))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/util/pgfplotscolormap.
code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/pgfplotsstackedplots.c
ode.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/pgfplotsplothandlers.c
ode.tex
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/pgfplotsmeshplothandle
r.code.tex))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/pgfplotscoordprocessin
g.code.tex)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/pgfplotsticks.code.tex
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/pgfplots.paths.code.te
x)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie
s/tikzlibrarydecorations.code.tex
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/modules/pgfmoduledecoration
s.code.tex
\pgfdecoratedcompleteddistance=\dimen169
\pgfdecoratedremainingdistance=\dimen170
\pgfdecoratedinputsegmentcompleteddistance=\dimen171
\pgfdecoratedinputsegmentremainingdistance=\dimen172
\pgf@decorate@distancetomove=\dimen173
\pgf@decorate@repeatstate=\count135
\pgfdecorationsegmentamplitude=\dimen174
\pgfdecorationsegmentlength=\dimen175
)
\tikz@lib@dec@box=\box37
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie
s/tikzlibrarydecorations.pathmorphing.code.tex
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/libraries/decorations/pgfli
brarydecorations.pathmorphing.code.tex))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie
s/tikzlibrarydecorations.pathreplacing.code.tex
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/libraries/decorations/pgfli
brarydecorations.pathreplacing.code.tex))
\pgfplots@numplots=\count136
\pgfplots@xmin@reg=\dimen176
\pgfplots@xmax@reg=\dimen177
\pgfplots@ymin@reg=\dimen178
\pgfplots@ymax@reg=\dimen179
\pgfplots@zmin@reg=\dimen180
\pgfplots@zmax@reg=\dimen181
)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie
s/tikzlibraryplotmarks.code.tex
File: tikzlibraryplotmarks.code.tex 2008/01/09 v2.10 (rcs-revision 1.1)
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgf/libraries/pgflibraryplotmar
ks.code.tex
File: pgflibraryplotmarks.code.tex 2010/10/15 v2.10 (rcs-revision 1.12)
)))
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/numtable/pgfplotstable
.code.tex
(/usr/local/texlive/2012/texmf-dist/tex/generic/pgfplots/numtable/pgfplotstable
.coltype.code.tex))
(/usr/local/texlive/2012/texmf-dist/tex/latex/tools/array.sty
Package: array 2008/09/09 v2.4c Tabular extension package (FMi)
\col@sep=\dimen182
\extrarowheight=\dimen183
\NC@list=\toks33
\extratabsurround=\skip45
\backup@length=\skip46
))
(/usr/local/texlive/2012/texmf-dist/tex/latex/csvsimple/csvsimple.sty
Package: csvsimple 2012/03/12 version 1.05 LaTeX CSV file processing
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/ifthen.sty
Package: ifthen 2001/05/26 v1.1c Standard LaTeX ifthen package (DPC)
)
\csv@file=\read2
\c@csvinputline=\count137
\c@csvrow=\count138
\c@csvcol=\count139
)
(/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/upquote.sty
Package: upquote 2003/08/11 v1.1 Covington's upright-quote modification to verb
atim and verb
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/textcomp.sty
Package: textcomp 2005/09/27 v1.99g Standard LaTeX package
Package textcomp Info: Sub-encoding information:
(textcomp) 5 = only ISO-Adobe without \textcurrency
(textcomp) 4 = 5 + \texteuro
(textcomp) 3 = 4 + \textohm
(textcomp) 2 = 3 + \textestimated + \textcurrency
(textcomp) 1 = TS1 - \textcircled - \t
(textcomp) 0 = TS1 (full)
(textcomp) Font families with sub-encoding setting implement
(textcomp) only a restricted character set as indicated.
(textcomp) Family '?' is the default used for unknown fonts.
(textcomp) See the documentation for details.
Package textcomp Info: Setting ? sub-encoding to TS1/1 on input line 71.
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/ts1enc.def
File: ts1enc.def 2001/06/05 v3.0e (jk/car/fm) Standard LaTeX file
)
LaTeX Info: Redefining \oldstylenums on input line 266.
Package textcomp Info: Setting cmr sub-encoding to TS1/0 on input line 281.
Package textcomp Info: Setting cmss sub-encoding to TS1/0 on input line 282.
Package textcomp Info: Setting cmtt sub-encoding to TS1/0 on input line 283.
Package textcomp Info: Setting cmvtt sub-encoding to TS1/0 on input line 284.
Package textcomp Info: Setting cmbr sub-encoding to TS1/0 on input line 285.
Package textcomp Info: Setting cmtl sub-encoding to TS1/0 on input line 286.
Package textcomp Info: Setting ccr sub-encoding to TS1/0 on input line 287.
Package textcomp Info: Setting ptm sub-encoding to TS1/4 on input line 288.
Package textcomp Info: Setting pcr sub-encoding to TS1/4 on input line 289.
Package textcomp Info: Setting phv sub-encoding to TS1/4 on input line 290.
Package textcomp Info: Setting ppl sub-encoding to TS1/3 on input line 291.
Package textcomp Info: Setting pag sub-encoding to TS1/4 on input line 292.
Package textcomp Info: Setting pbk sub-encoding to TS1/4 on input line 293.
Package textcomp Info: Setting pnc sub-encoding to TS1/4 on input line 294.
Package textcomp Info: Setting pzc sub-encoding to TS1/4 on input line 295.
Package textcomp Info: Setting bch sub-encoding to TS1/4 on input line 296.
Package textcomp Info: Setting put sub-encoding to TS1/5 on input line 297.
Package textcomp Info: Setting uag sub-encoding to TS1/5 on input line 298.
Package textcomp Info: Setting ugq sub-encoding to TS1/5 on input line 299.
Package textcomp Info: Setting ul8 sub-encoding to TS1/4 on input line 300.
Package textcomp Info: Setting ul9 sub-encoding to TS1/4 on input line 301.
Package textcomp Info: Setting augie sub-encoding to TS1/5 on input line 302.
Package textcomp Info: Setting dayrom sub-encoding to TS1/3 on input line 303.
Package textcomp Info: Setting dayroms sub-encoding to TS1/3 on input line 304.
Package textcomp Info: Setting pxr sub-encoding to TS1/0 on input line 305.
Package textcomp Info: Setting pxss sub-encoding to TS1/0 on input line 306.
Package textcomp Info: Setting pxtt sub-encoding to TS1/0 on input line 307.
Package textcomp Info: Setting txr sub-encoding to TS1/0 on input line 308.
Package textcomp Info: Setting txss sub-encoding to TS1/0 on input line 309.
Package textcomp Info: Setting txtt sub-encoding to TS1/0 on input line 310.
Package textcomp Info: Setting lmr sub-encoding to TS1/0 on input line 311.
Package textcomp Info: Setting lmdh sub-encoding to TS1/0 on input line 312.
Package textcomp Info: Setting lmss sub-encoding to TS1/0 on input line 313.
Package textcomp Info: Setting lmssq sub-encoding to TS1/0 on input line 314.
Package textcomp Info: Setting lmvtt sub-encoding to TS1/0 on input line 315.
Package textcomp Info: Setting qhv sub-encoding to TS1/0 on input line 316.
Package textcomp Info: Setting qag sub-encoding to TS1/0 on input line 317.
Package textcomp Info: Setting qbk sub-encoding to TS1/0 on input line 318.
Package textcomp Info: Setting qcr sub-encoding to TS1/0 on input line 319.
Package textcomp Info: Setting qcs sub-encoding to TS1/0 on input line 320.
Package textcomp Info: Setting qpl sub-encoding to TS1/0 on input line 321.
Package textcomp Info: Setting qtm sub-encoding to TS1/0 on input line 322.
Package textcomp Info: Setting qzc sub-encoding to TS1/0 on input line 323.
Package textcomp Info: Setting qhvc sub-encoding to TS1/0 on input line 324.
Package textcomp Info: Setting futs sub-encoding to TS1/4 on input line 325.
Package textcomp Info: Setting futx sub-encoding to TS1/4 on input line 326.
Package textcomp Info: Setting futj sub-encoding to TS1/4 on input line 327.
Package textcomp Info: Setting hlh sub-encoding to TS1/3 on input line 328.
Package textcomp Info: Setting hls sub-encoding to TS1/3 on input line 329.
Package textcomp Info: Setting hlst sub-encoding to TS1/3 on input line 330.
Package textcomp Info: Setting hlct sub-encoding to TS1/5 on input line 331.
Package textcomp Info: Setting hlx sub-encoding to TS1/5 on input line 332.
Package textcomp Info: Setting hlce sub-encoding to TS1/5 on input line 333.
Package textcomp Info: Setting hlcn sub-encoding to TS1/5 on input line 334.
Package textcomp Info: Setting hlcw sub-encoding to TS1/5 on input line 335.
Package textcomp Info: Setting hlcf sub-encoding to TS1/5 on input line 336.
Package textcomp Info: Setting pplx sub-encoding to TS1/3 on input line 337.
Package textcomp Info: Setting pplj sub-encoding to TS1/3 on input line 338.
Package textcomp Info: Setting ptmx sub-encoding to TS1/4 on input line 339.
Package textcomp Info: Setting ptmj sub-encoding to TS1/4 on input line 340.
))
(./34_clover_pallescens.aux)
\openout1 = `34_clover_pallescens.aux'.
LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 71.
LaTeX Font Info: ... okay on input line 71.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 71.
LaTeX Font Info: ... okay on input line 71.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 71.
LaTeX Font Info: ... okay on input line 71.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 71.
LaTeX Font Info: ... okay on input line 71.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 71.
LaTeX Font Info: ... okay on input line 71.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 71.
LaTeX Font Info: ... okay on input line 71.
LaTeX Font Info: Checking defaults for PD1/pdf/m/n on input line 71.
LaTeX Font Info: ... okay on input line 71.
LaTeX Font Info: Checking defaults for PU/pdf/m/n on input line 71.
LaTeX Font Info: ... okay on input line 71.
LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 71.
LaTeX Font Info: Try loading font information for TS1+cmr on input line 71.
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/ts1cmr.fd
File: ts1cmr.fd 1999/05/25 v2.5h Standard LaTeX font definitions
)
LaTeX Font Info: ... okay on input line 71.
LaTeX Font Info: Try loading font information for T1+pplx on input line 71.
(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/t1pplx.fd
File: t1pplx.fd 2004/09/06 font definitions for T1/pplx.
)
(/usr/local/texlive/2012/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
\scratchcounter=\count140
\scratchdimen=\dimen184
\scratchbox=\box38
\nofMPsegments=\count141
\nofMParguments=\count142
\everyMPshowfont=\toks34
\MPscratchCnt=\count143
\MPscratchDim=\dimen185
\MPnumerator=\count144
\makeMPintoPDFobject=\count145
\everyMPtoPDFconversion=\toks35
) (/usr/local/texlive/2012/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
Package: epstopdf-base 2010/02/09 v2.5 Base part for package epstopdf
(/usr/local/texlive/2012/texmf-dist/tex/latex/oberdiek/grfext.sty
Package: grfext 2010/08/19 v1.1 Manage graphics extensions (HO)
)
Package grfext Info: Graphics extension search list:
(grfext) [.png,.pdf,.jpg,.mps,.jpeg,.jbig2,.jb2,.PNG,.PDF,.JPG,.JPE
G,.JBIG2,.JB2,.eps]
(grfext) \AppendGraphicsExtensions on input line 452.
(/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv
e
))
\big@size=\dimen186
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
Package geometry Warning: The marginal notes overrun the paper.
Add 4.86812pt and more to the right margin.
*geometry* verbose mode - [ preamble ] result:
* driver: pdftex
* paper: <default>
* layout: <same size as paper>
* layoutoffset:(h,v)=(0.0pt,0.0pt)
* modes:
* h-part:(L,W,R)=(71.13188pt, 472.03123pt, 71.13188pt)
* v-part:(T,H,B)=(71.13188pt, 652.70622pt, 71.13188pt)
* \paperwidth=614.295pt
* \paperheight=794.96999pt
* \textwidth=472.03123pt
* \textheight=652.70622pt
* \oddsidemargin=-1.1381pt
* \evensidemargin=-1.1381pt
* \topmargin=-38.1381pt
* \headheight=12.0pt
* \headsep=25.0pt
* \topskip=10.0pt
* \footskip=30.0pt
* \marginparwidth=65.0pt
* \marginparsep=11.0pt
* \columnsep=10.0pt
* \skip\footins=9.0pt plus 4.0pt minus 2.0pt
* \hoffset=0.0pt
* \voffset=0.0pt
* \mag=1000
* \@twocolumnfalse
* \@twosidefalse
* \@mparswitchfalse
* \@reversemarginfalse
* (1in=72.27pt=25.4mm, 1cm=28.453pt)
\AtBeginShipoutBox=\box39
Package hyperref Info: Link coloring OFF on input line 71.
(/usr/local/texlive/2012/texmf-dist/tex/latex/hyperref/nameref.sty
Package: nameref 2010/04/30 v2.40 Cross-referencing by name of section
(/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/gettitlestring.sty
Package: gettitlestring 2010/12/03 v1.4 Cleanup title references (HO)
)
\c@section@level=\count146
)
LaTeX Info: Redefining \ref on input line 71.
LaTeX Info: Redefining \pageref on input line 71.
LaTeX Info: Redefining \nameref on input line 71.
(./34_clover_pallescens.out) (./34_clover_pallescens.out)
\@outlinefile=\write4
\openout4 = `34_clover_pallescens.out'.
\c@lstlisting=\count147
ABD: EveryShipout initializing macros
LaTeX Font Info: Try loading font information for OT1+pplx on input line 98.
(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/ot1pplx.fd
File: ot1pplx.fd 2004/09/06 font definitions for OT1/pplx.
)
LaTeX Font Info: Try loading font information for OML+zplm on input line 98.
(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/omlzplm.fd
File: omlzplm.fd 2002/09/08 Fontinst v1.914 font definitions for OML/zplm.
)
LaTeX Font Info: Try loading font information for OMS+zplm on input line 98.
(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/omszplm.fd
File: omszplm.fd 2002/09/08 Fontinst v1.914 font definitions for OMS/zplm.
)
LaTeX Font Info: Try loading font information for OMX+zplm on input line 98.
(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/omxzplm.fd
File: omxzplm.fd 2002/09/08 Fontinst v1.914 font definitions for OMX/zplm.
)
LaTeX Font Info: Try loading font information for OT1+zplm on input line 98.
(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/ot1zplm.fd
File: ot1zplm.fd 2002/09/08 Fontinst v1.914 font definitions for OT1/zplm.
)
LaTeX Font Info: Font shape `T1/pplx/bx/n' in size <14.4> not available
(Font) Font shape `T1/pplx/b/n' tried instead on input line 100.
(./34_clover_pallescens.toc
LaTeX Font Info: Font shape `T1/pplx/bx/n' in size <10> not available
(Font) Font shape `T1/pplx/b/n' tried instead on input line 1.
)
\tf@toc=\write5
\openout5 = `34_clover_pallescens.toc'.
[1
{/usr/local/texlive/2012/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]
Package xcolor Warning: Incompatible color definition on input line 115.
LaTeX Font Info: Try loading font information for T1+cmtt on input line 116.
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/t1cmtt.fd
File: t1cmtt.fd 1999/05/25 v2.5h Standard LaTeX font definitions
)
LaTeX Font Info: Font shape `T1/cmtt/bx/n' in size <10> not available
(Font) Font shape `T1/cmtt/m/n' tried instead on input line 117.
Overfull \hbox (94.83034pt too wide) in paragraph at lines 117--117
[]\T1/cmtt/m/n/10 p <- []path.expand[]([]"/Volumes/GenomeDK/LotusGenome/01_vgup
ta/11_clover/20140709_clover_pallescens/RogerMoraga"[])[]
[]
Overfull \hbox (37.09444pt too wide) in paragraph at lines 123--123
[]\T1/cmtt/m/n/10 ## [1] "/Volumes/GenomeDK/LotusGenome/01_vgupta/11_clover/201
40709_clover_pallescens/RogerMoraga"[]
[]
LaTeX Font Info: Try loading font information for TS1+cmtt on input line 126
.
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/ts1cmtt.fd
File: ts1cmtt.fd 1999/05/25 v2.5h Standard LaTeX font definitions
)
Package atveryend Info: Empty hook `BeforeClearDocument' on input line 143.
[2]
Package atveryend Info: Empty hook `AfterLastShipout' on input line 143.
(./34_clover_pallescens.aux)
Package atveryend Info: Executing hook `AtVeryEndDocument' on input line 143.
Package atveryend Info: Executing hook `AtEndAfterFileList' on input line 143.
Package rerunfilecheck Info: File `34_clover_pallescens.out' has not changed.
(rerunfilecheck) Checksum: E4284436B3920BE9AD55BCE3A8B29689;80.
Package atveryend Info: Empty hook `AtVeryVeryEnd' on input line 143.
)
Here is how much of TeX's memory you used:
23906 strings out of 493488
508844 string characters out of 3141325
622410 words of memory out of 3000000
26759 multiletter control sequences out of 15000+200000
25576 words of font info for 49 fonts, out of 3000000 for 9000
957 hyphenation exceptions out of 8191
70i,6n,76p,665b,609s stack positions out of 5000i,500n,10000p,200000b,50000s
{/usr/local/texlive/2012/texmf-dist/fonts/enc/dvips/cm-super/cm-super-ts1.enc
}{/usr/local/texlive/2012/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t1.enc}{
/usr/local/texlive/2012/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/local/texl
ive/2012/texmf-dist/fonts/type1/public/cm-super/sfit1000.pfb></usr/local/texliv
e/2012/texmf-dist/fonts/type1/public/cm-super/sftt1000.pfb></usr/local/texlive/
2012/texmf-dist/fonts/type1/urw/palatino/uplb8a.pfb></usr/local/texlive/2012/te
xmf-dist/fonts/type1/urw/palatino/uplr8a.pfb>
Output written on 34_clover_pallescens.pdf (2 pages, 78621 bytes).
PDF statistics:
48 PDF objects out of 1000 (max. 8388607)
39 compressed objects within 1 object stream
5 named destinations out of 1000 (max. 500000)
21 words of extra memory for PDF output out of 10000 (max. 10000000)