diff --git a/CHANGELOG.md b/CHANGELOG.md
index 6bd21a1e..9096bdc6 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -20,11 +20,11 @@
                 based on a provided sequence IDs or region coordinates file (PR #85).
 
 * `agat`:
-  - `agat/agat_convert_sp_gff2gtf`: convert any GTF/GFF file into a proper GTF file (PR #76).
-  - `agat/agat_convert_bed2gff`: convert bed file to gff format (PR #97).
-  - `agat/agat_convert_embl2gff`: convert an EMBL file into GFF format (PR #99).
-  - `agat/agat_convert_sp_gff2tsv`: convert gtf/gff file into tabulated file (PR #102).
-  - `agat/agat_convert_sp_gxf2gxf`: fixes and/or standardizes any GTF/GFF file into full sorted GTF/GFF file (PR #103).
+  - `agat_convert_sp_gff2gtf`: convert any GTF/GFF file into a proper GTF file (PR #76).
+  - `agat_convert_bed2gff`: convert bed file to gff format (PR #97).
+  - `agat_convert_embl2gff`: convert an EMBL file into GFF format (PR #99).
+  - `agat_convert_sp_gff2tsv`: convert gtf/gff file into tabulated file (PR #102, PR #115).
+  - `agat_convert_sp_gxf2gxf`: fixes and/or standardizes any GTF/GFF file into full sorted GTF/GFF file (PR #103).
 
 * `bedtools`:
   - `bedtools/bedtools_intersect`: Allows one to screen for overlaps between two sets of genomic features (PR #94).
diff --git a/src/agat/agat_convert_sp_gff2tsv/config.vsh.yaml b/src/agat/agat_convert_sp_gff2tsv/config.vsh.yaml
index f1c78590..6ecd559c 100644
--- a/src/agat/agat_convert_sp_gff2tsv/config.vsh.yaml
+++ b/src/agat/agat_convert_sp_gff2tsv/config.vsh.yaml
@@ -3,7 +3,7 @@ namespace: agat
 description: |
     The script aims to convert gtf/gff file into tabulated file. Attribute's
     tags from the 9th column become column titles.
-keywords: [gene annotations, GFF conversion]
+keywords: [gene annotations, GFF conversion, TSV]
 links:
   homepage: https://github.com/NBISweden/AGAT
   documentation: https://agat.readthedocs.io/en/latest/tools/agat_convert_sp_gff2tsv.html
@@ -12,10 +12,11 @@ links:
 references: 
   doi: 10.5281/zenodo.3552717
 license: GPL-3.0
+requirements:
+  - commands: [agat]
 authors:
   - __merge__: /src/_authors/leila_paquay.yaml
     roles: [ author, maintainer ]
-
 argument_groups:
   - name: Inputs
     arguments:
@@ -30,7 +31,7 @@ argument_groups:
     arguments:       
       - name: --output
         alternatives: [-o, --out, --outfile]
-        description: Output GFF file. If no output file is specified, the output will be written to STDOUT.
+        description: Output GFF file.
         type: file
         direction: output
         required: true
@@ -40,13 +41,7 @@ argument_groups:
       - name: --config
         alternatives: [-c]
         description: |
-          String - Input agat config file. By default AGAT takes as input
-          agat_config.yaml file from the working directory if any,
-          otherwise it takes the orignal agat_config.yaml shipped with
-          AGAT. To get the agat_config.yaml locally type: "agat config
-          --expose". The --config option gives you the possibility to use
-          your own AGAT config file (located elsewhere or named
-          differently).        
+          AGAT config file. By default AGAT takes the original agat_config.yaml shipped with AGAT. The `--config` option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
         type: file
         required: false
         example: custom_agat_config.yaml
diff --git a/src/agat/agat_convert_sp_gff2tsv/script.sh b/src/agat/agat_convert_sp_gff2tsv/script.sh
index 6393303c..20e76be2 100644
--- a/src/agat/agat_convert_sp_gff2tsv/script.sh
+++ b/src/agat/agat_convert_sp_gff2tsv/script.sh
@@ -1,9 +1,11 @@
 #!/bin/bash
 
+set -eo pipefail
+
 ## VIASH START
 ## VIASH END
 
 agat_convert_sp_gff2tsv.pl \
-  -f "$par_gff" \
-  -o "$par_output" \
+  -gff "$par_gff" \
+  -output "$par_output" \
   ${par_config:+--config "${par_config}"}
diff --git a/src/agat/agat_convert_sp_gff2tsv/test.sh b/src/agat/agat_convert_sp_gff2tsv/test.sh
index fabe46b9..91bf6603 100644
--- a/src/agat/agat_convert_sp_gff2tsv/test.sh
+++ b/src/agat/agat_convert_sp_gff2tsv/test.sh
@@ -1,26 +1,34 @@
 #!/bin/bash
 
+set -eo pipefail
+
 ## VIASH START
 ## VIASH END
 
 test_dir="${meta_resources_dir}/test_data"
-out_dir="${meta_resources_dir}/out_data"
+
+# create temporary directory and clean up on exit
+TMPDIR=$(mktemp -d "$meta_temp_dir/$meta_functionality_name-XXXXXX")
+function clean_up {
+ [[ -d "$TMPDIR" ]] && rm -rf "$TMPDIR"
+}
+trap clean_up EXIT
 
 echo "> Run $meta_name with test data"
 "$meta_executable" \
   --gff "$test_dir/1.gff" \
-  --output "$out_dir/output.gff" 
+  --output "$TMPDIR/output.tsv" 
 
 echo ">> Checking output"
-[ ! -f "$out_dir/output.gff" ] && echo "Output file output.gff does not exist" && exit 1
+[ ! -f "$TMPDIR/output.tsv" ] && echo "Output file output.tsv does not exist" && exit 1
 
 echo ">> Check if output is empty"
-[ ! -s "$out_dir/output.gff" ] && echo "Output file output.gff is empty" && exit 1
+[ ! -s "$TMPDIR/output.tsv" ] && echo "Output file output.tsv is empty" && exit 1
 
 echo ">> Check if output matches expected output"
-diff "$out_dir/output.gff" "$test_dir/agat_convert_sp_gff2tsv_1.tsv"
+diff "$TMPDIR/output.tsv" "$test_dir/agat_convert_sp_gff2tsv_1.tsv"
 if [ $? -ne 0 ]; then
-  echo "Output file output.gff does not match expected output"
+  echo "Output file output.tsv does not match expected output"
   exit 1
 fi
 
diff --git a/src/agat/agat_convert_sp_gff2tsv/test_data/script.sh b/src/agat/agat_convert_sp_gff2tsv/test_data/script.sh
index ba7ba143..63242902 100755
--- a/src/agat/agat_convert_sp_gff2tsv/test_data/script.sh
+++ b/src/agat/agat_convert_sp_gff2tsv/test_data/script.sh
@@ -6,5 +6,5 @@ if [ ! -d /tmp/agat_source ]; then
 fi
 
 # copy test data
-cp -r /tmp/agat_source/t/scripts_output/out/agat_convert_sp_gff2tsv_1.tsv src/agat/agat_convert_sp_gff2tsv/test_data
 cp -r /tmp/agat_source/t/scripts_output/in/1.gff src/agat/agat_convert_sp_gff2tsv/test_data
+cp -r /tmp/agat_source/t/scripts_output/out/agat_convert_sp_gff2tsv_1.tsv src/agat/agat_convert_sp_gff2tsv/test_data