diff --git a/src/agat/agat_sp_ensembl_output_style/test.sh b/src/agat/agat_sp_ensembl_output_style/test.sh new file mode 100644 index 00000000..db71c103 --- /dev/null +++ b/src/agat/agat_sp_ensembl_output_style/test.sh @@ -0,0 +1,27 @@ +#!/bin/bash + +## VIASH START +## VIASH END + +test_dir="${meta_resources_dir}/test_data" +out_dir="${meta_resources_dir}/out_data" + +echo "> Run $meta_name with test data" +"$meta_executable" \ + --gff "$test_dir/0.gff" \ + --output "$out_dir/output.gff" + +echo ">> Checking output" +[ ! -f "$out_dir/output.gff" ] && echo "Output file output.gff does not exist" && exit 1 + +echo ">> Check if output is empty" +[ ! -s "$out_dir/output.gff" ] && echo "Output file output.gff is empty" && exit 1 + +echo ">> Check if output matches expected output" +diff "$out_dir/output.gff" "$test_dir/agat_sp_ensembl_output_style_1.gff" +if [ $? -ne 0 ]; then + echo "Output file output.gff does not match expected output" + exit 1 +fi + +echo "> Test successful" \ No newline at end of file