From fc36c643519f3db8393da6b17ee35b98f69410ba Mon Sep 17 00:00:00 2001
From: Kai Waldrant <kai@data-intuitive.com>
Date: Tue, 6 Feb 2024 11:51:54 +0100
Subject: [PATCH] update test lofreq call

---
 src/lofreq/call/test.sh | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/src/lofreq/call/test.sh b/src/lofreq/call/test.sh
index ccd8100c..457687d3 100644
--- a/src/lofreq/call/test.sh
+++ b/src/lofreq/call/test.sh
@@ -14,4 +14,7 @@ echo "> Run lofreq call"
 echo ">> Checking output"
 [ ! -f "output.vcf" ] && echo "Output file output.vcf does not exist" && exit 1
 
+echo ">> Check if output is empty"
+[ ! -s "output.vcf" ] && echo "Output file output.vcf is empty" && exit 1
+
 echo "> Test successful"
\ No newline at end of file