From f6e4d910b796a8d68740cf767655be01a83095b2 Mon Sep 17 00:00:00 2001
From: Robrecht Cannoodt <rcannood@gmail.com>
Date: Tue, 17 Sep 2024 09:00:41 +0200
Subject: [PATCH] splitting hairs here

---
 src/bd_rhapsody/bd_rhapsody_sequence_analysis/script.py | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/src/bd_rhapsody/bd_rhapsody_sequence_analysis/script.py b/src/bd_rhapsody/bd_rhapsody_sequence_analysis/script.py
index c96eaa2e..cbddf6bf 100644
--- a/src/bd_rhapsody/bd_rhapsody_sequence_analysis/script.py
+++ b/src/bd_rhapsody/bd_rhapsody_sequence_analysis/script.py
@@ -228,10 +228,11 @@ def main(par: dict[str, Any], meta: dict[str, Any], temp_dir: str):
 
     # Run command
     print("> " + ' '.join(cmd), flush=True)
-    _ = subprocess.check_call(
+    _ = subprocess.run(
         cmd,
         cwd=os.path.dirname(config_file),
-        env=env
+        env=env,
+        check=True
     )
 
     # Copy outputs