diff --git a/src/agat/agat_sp_add_intergenic_regions/config.vsh.yaml b/src/agat/agat_sp_add_intergenic_regions/config.vsh.yaml index 1451d4cb..8ab4322b 100644 --- a/src/agat/agat_sp_add_intergenic_regions/config.vsh.yaml +++ b/src/agat/agat_sp_add_intergenic_regions/config.vsh.yaml @@ -4,7 +4,7 @@ description: | The script aims to add intergenic features (intergenic_region) to gtf/gff file. The intergenic regions are deduced from gene features (feature type gene from the 3rd column). -keywords: [gene annotations] +keywords: [gene annotations, intergenic regions] links: homepage: https://github.com/NBISweden/AGAT documentation: https://agat.readthedocs.io/en/latest/tools/agat_sp_add_intergenic_regions.html @@ -13,6 +13,8 @@ links: references: doi: 10.5281/zenodo.3552717 license: GPL-3.0 +requirements: + - commands: [agat] authors: - __merge__: /src/_authors/leila_paquay.yaml roles: [ author, maintainer ] @@ -40,7 +42,7 @@ argument_groups: - name: --config alternatives: [-c] description: | - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the original agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: `agat config --expose`. The `--config` option gives you the possibility to use your own AGAT config file (located elsewhere or named differently). + AGAT config file. By default AGAT takes the original agat_config.yaml shipped with AGAT. The `--config` option gives you the possibility to use your own AGAT config file (located elsewhere or named differently). type: file required: false example: custom_agat_config.yaml