From e2b5be4de2ef05f574ac512c2dbebdad130b0d15 Mon Sep 17 00:00:00 2001
From: Leila011 <leilapaquay@gmail.com>
Date: Sun, 4 Aug 2024 13:42:38 +0200
Subject: [PATCH] add test

---
 src/agat/agat_convert_mfannot2gff/test.sh | 27 +++++++++++++++++++++++
 1 file changed, 27 insertions(+)
 create mode 100644 src/agat/agat_convert_mfannot2gff/test.sh

diff --git a/src/agat/agat_convert_mfannot2gff/test.sh b/src/agat/agat_convert_mfannot2gff/test.sh
new file mode 100644
index 00000000..cbbc9cda
--- /dev/null
+++ b/src/agat/agat_convert_mfannot2gff/test.sh
@@ -0,0 +1,27 @@
+#!/bin/bash
+
+## VIASH START
+## VIASH END
+
+test_dir="${meta_resources_dir}/test_data"
+out_dir="${meta_resources_dir}/out_data"
+
+echo "> Run $meta_name with test data"
+"$meta_executable" \
+  --mfannot "$test_dir/test.mfannot" \
+  --gff "$out_dir/output.gff" 
+
+echo ">> Checking output"
+[ ! -f "$out_dir/output.gff" ] && echo "Output file output.gff does not exist" && exit 1
+
+echo ">> Check if output is empty"
+[ ! -s "$out_dir/output.gff" ] && echo "Output file output.gff is empty" && exit 1
+
+echo ">> Check if output matches expected output"
+diff "$out_dir/output.gff" "$test_dir/agat_convert_mfannot2gff_1.gff"
+if [ $? -ne 0 ]; then
+  echo "Output file output.gff does not match expected output"
+  exit 1
+fi
+
+echo "> Test successful"
\ No newline at end of file