diff --git a/CHANGELOG.md b/CHANGELOG.md index 9dd2389c..73a03dc7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -26,7 +26,7 @@ * `bedtools`: - `bedtools/bedtools_intersect`: Allows one to screen for overlaps between two sets of genomic features (PR #94). - `bedtools/bedtools_sort`: Sorts a feature file (bed/gff/vcf) by chromosome and other criteria (PR #98). - + - `bedtools/bedtools_genomecov`: Compute the coverage of a feature file (bed/gff/vcf/bam) among a genome (PR #128). ## MINOR CHANGES diff --git a/src/bedtools/bedtools_genomecov/test_data/example.bed b/src/bedtools/bedtools_genomecov/test_data/example.bed deleted file mode 100644 index 09df88eb..00000000 --- a/src/bedtools/bedtools_genomecov/test_data/example.bed +++ /dev/null @@ -1,2 +0,0 @@ -chr2 128 228 my_read/1 37 + -chr2 428 528 my_read/2 37 - diff --git a/src/bedtools/bedtools_genomecov/test_data/example.bed12 b/src/bedtools/bedtools_genomecov/test_data/example.bed12 deleted file mode 100644 index 58c7a75d..00000000 --- a/src/bedtools/bedtools_genomecov/test_data/example.bed12 +++ /dev/null @@ -1,2 +0,0 @@ -chr2 128 228 my_read/1 60 + 128 228 255,0,0 1 100 0 -chr2 428 528 my_read/2 60 - 428 528 255,0,0 1 100 0 diff --git a/src/bedtools/bedtools_genomecov/test_data/example_dz.bed b/src/bedtools/bedtools_genomecov/test_data/example_dz.bed deleted file mode 100644 index a5b1a250..00000000 --- a/src/bedtools/bedtools_genomecov/test_data/example_dz.bed +++ /dev/null @@ -1 +0,0 @@ -chr2 100 103 diff --git a/src/bedtools/bedtools_genomecov/test_data/genome.txt b/src/bedtools/bedtools_genomecov/test_data/genome.txt deleted file mode 100644 index 460c34fe..00000000 --- a/src/bedtools/bedtools_genomecov/test_data/genome.txt +++ /dev/null @@ -1,3 +0,0 @@ -chr1 248956422 -chr2 198295559 -chr3 242193529